Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O20
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.77 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.77
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +3

Query: 852 PXXXPXXXPXXPXXXXPPXXPXXPPXXPPXXXPP 953
           P   P   P  P    PP     PP   P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 884 PXXPXXXPXPXXPPXXPPPXXP 949
           P  P   P P  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 857 PXPXXXPXXPXXPXXXPXPXXPPXXPPPXXPP 952
           P P   P           P  P   PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 862 PPXXXXGXPXXXXXPXPPPXPPPXPPXXXP 951
           P     G P       PP  PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 910 PPPXPPPXPP 939
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 295 WGTSTTAPSSCRP 257
           WG     PS+CRP
Sbjct: 512 WGILVYEPSACRP 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,389
Number of Sequences: 438
Number of extensions: 6128
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)