Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O18
         (979 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.60 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.79 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.79 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +2

Query: 611 SPPRAPCGXLTPXWXXPPPPPPPXXPHXXPXPPXXPCPXPXPXXRPSPA 757
           S  R+P G   P     P PP P   +    PP    P   P     P+
Sbjct: 399 SAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPS 447



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 777 PPPXXXPXXPSPAXPHXTSXXGPXPXXPXPPPXPXP 884
           P P   P  P    P   S   P    P  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +3

Query: 849 PXXPXPPPXPXPPXXXSXXPXPPPXRAXXAPXPXPXPXPPP 971
           P    P P P P           P      P P   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 17/61 (27%), Positives = 19/61 (31%)
 Frame = +2

Query: 566 PLRXPLPM*VVXRWSSPPRAPCGXLTPXWXXPPPPPPPXXPHXXPXPPXXPCPXPXPXXR 745
           P+  P P     R    P A  G   P +   P PP P         P    P   P  R
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPR 162

Query: 746 P 748
           P
Sbjct: 163 P 163



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 22/105 (20%), Positives = 27/105 (25%)
 Frame = +2

Query: 602 RWSSPPRAPCGXLTPXWXXPPPPPPPXXPHXXPXPPXXPCPXPXPXXRPSPAHXXFXLXP 781
           R  + P+A  G   P +   P PP P                P    +P P H      P
Sbjct: 61  RREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREP 120

Query: 782 TXPAPXXPXPRXPPXHLPXRPXXXXXXXXXXXXXXXXXLXXPXPP 916
               P    P   P   P  P                 +  P PP
Sbjct: 121 -EAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 883 PPXXPPPPPPP 915
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 886 PXXPPPPPPPXPXAXP 933
           P  P PPPPP   + P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 641 TPXWXXPPPPPP 676
           TP    PPPPPP
Sbjct: 337 TPPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 945 PXPXPXPPPP 974
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 877 PXPPXXPPPPP 909
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 659  PPPPPPP 679
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 895  PPPPPPP 915
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 659  PPPPPPP 679
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 895  PPPPPPP 915
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 898  PPPPPPXP 921
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 650  WXXPPPPPPPXXP 688
            W    PPPPP  P
Sbjct: 1350 WRQQQPPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 753 GEGRXWGXGXGQGXXGGXGXXWGXXGGGGGG 661
           G G     G   G  GG        GGGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 959 GXWXGXXGXGXAXGXGGGGGGGXXG 885
           G   G  G     G   GGGGG  G
Sbjct: 29  GVVTGASGGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 644  PXWXXPPPPPPPXXPH 691
            P    P PPPPP   H
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 637 GPARCSGWGTPSXHDLH 587
           GP R  GW  P+   +H
Sbjct: 16  GPPRLLGWNVPAEELIH 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,903
Number of Sequences: 438
Number of extensions: 10561
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)