Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O17
         (1055 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   8e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    48   5e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.11 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.19 
UniRef50_A0D550 Cluster: Chromosome undetermined scaffold_38, wh...    35   3.1  
UniRef50_Q2H2P1 Cluster: Putative uncharacterized protein; n=1; ...    35   3.1  
UniRef50_UPI00015559A4 Cluster: PREDICTED: similar to Immunoglob...    34   5.4  
UniRef50_UPI0000DB6CCB Cluster: PREDICTED: hypothetical protein;...    34   7.1  
UniRef50_Q54VM1 Cluster: Putative uncharacterized protein; n=1; ...    34   7.1  
UniRef50_Q9XDH2 Cluster: Proline-rich mucin homolog; n=2; Mycoba...    33   9.4  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 8e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +1

Query: 316 RGEAVCVLGALPLPRSLTXCARSFGCGERYQLT 414
           R   +C  G +PLPRSLT  ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 47.6 bits (108), Expect = 5e-04
 Identities = 23/35 (65%), Positives = 24/35 (68%)
 Frame = +1

Query: 292 CINESANARGEAVCVLGALPLPRSLTXCARSFGCG 396
           CI + A AR EAV VL ALPL RS T C RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.9 bits (89), Expect = 0.11
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 93  DPXMIRYIDEFGQTTTXMQ 149
           DP MIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.11
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 362 ERGSGRAPNTQTASPRALADSLMQ 291
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 39.1 bits (87), Expect = 0.19
 Identities = 21/40 (52%), Positives = 24/40 (60%)
 Frame = +2

Query: 221 TKLTTTIAFILCFRFRXEVWEVFSALMNXPTRGERRFAYW 340
           ++LT      L  RF      V +ALMN PTRGERRFAYW
Sbjct: 2   SELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_A0D550 Cluster: Chromosome undetermined scaffold_38, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_38,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 493

 Score = 35.1 bits (77), Expect = 3.1
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 567 QKFXRLQXQXVAQTPPRXLFXNSXGPFPPLXXXPPXCPLPXGXPXPWPP 713
           Q++ + Q Q + Q PP+     S  P PP    PP  P P G P P PP
Sbjct: 340 QQYQQPQQQQIQQPPPQQQQNKSAPPPPP----PPPPPPPKGAPPPPPP 384


>UniRef50_Q2H2P1 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 1072

 Score = 35.1 bits (77), Expect = 3.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 597 VAQTPPRXLFXNSXGPFPPLXXXPPXCPLPXGXPXPWPP 713
           + QTPPR     S  P PP+   PP  P     P P PP
Sbjct: 653 IEQTPPRETSKRSSRPPPPVPGSPPALPPVQSRPPPPPP 691


>UniRef50_UPI00015559A4 Cluster: PREDICTED: similar to
           Immunoglobulin-like domain containing receptor 1; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           Immunoglobulin-like domain containing receptor 1 -
           Ornithorhynchus anatinus
          Length = 428

 Score = 34.3 bits (75), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 475 SKRPXKGPXTXKXPRCLASFHRPPPPLXQHHKNSNASKXRXWP--KPPP 615
           S+RP +GP     PR     H PPPP  +   +S   K   WP  +PPP
Sbjct: 342 SRRPPRGP-----PRRRPRSHSPPPPSARSSWSSEDEKCPRWPGTQPPP 385


>UniRef50_UPI0000DB6CCB Cluster: PREDICTED: hypothetical protein; n=1;
            Apis mellifera|Rep: PREDICTED: hypothetical protein -
            Apis mellifera
          Length = 394

 Score = 33.9 bits (74), Expect = 7.1
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 891  PPXPXPXPPXPXXXXXXXXXXXXXXXXXXXXXPXYPXSPPPXXSXPXXIPTRHPT 1055
            PP P P PP P                     P  P  PPP  S P  +PT   T
Sbjct: 245  PPPPPPPPPPPPPPPPPPPPPPPPPPPLPPPPPPPPPLPPPPPSLPLPLPTTSAT 299


>UniRef50_Q54VM1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 414

 Score = 33.9 bits (74), Expect = 7.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 715 KGGQGXGXPXGRGXXGGXFXRGGKGPXEXLKSXRGG 608
           +GG+G G   GRG  GG   RGG+G     +  RGG
Sbjct: 10  RGGRGGGFRGGRGGSGGGLDRGGRG---GFRGGRGG 42


>UniRef50_Q9XDH2 Cluster: Proline-rich mucin homolog; n=2;
           Mycobacterium tuberculosis|Rep: Proline-rich mucin
           homolog - Mycobacterium tuberculosis
          Length = 763

 Score = 33.5 bits (73), Expect = 9.4
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 642 PFPPLXXXPPXCPLPXGXP-XPWPPLTGNNRSRP 740
           P PPL   PP  PLP   P  P PPLT N    P
Sbjct: 688 PAPPLPMSPPAPPLPPAAPDPPAPPLTINQPPSP 721


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,494,268
Number of Sequences: 1657284
Number of extensions: 11051689
Number of successful extensions: 39786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36697
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 102062831750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)