Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O17
         (1055 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   3.2  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    29   4.2  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    29   4.2  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      29   4.2  
Z81120-1|CAB03342.1|  207|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   7.4  
AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical...    28   9.7  
AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical...    28   9.7  
AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical...    28   9.7  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 609 PPRXLFXNSXGPFPPLXXXPPXCPLPXGXPXPWPPLTG 722
           PP  +F     P PP+    P  P   G P P PP +G
Sbjct: 85  PPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSG 122


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 715 KGGQGXGXPXGRGXXGGXFXRGGKG 641
           +GG G G   GRG  GG   RGG G
Sbjct: 698 RGGYGGGDRGGRGGYGGDRGRGGYG 722


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 715 KGGQGXGXPXGRGXXGGXFXRGGKG 641
           +GG G G   GRG  GG   RGG G
Sbjct: 739 RGGYGGGDRGGRGGYGGDRGRGGYG 763


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 715 KGGQGXGXPXGRGXXGGXFXRGGKG 641
           +GG G G   GRG  GG   RGG G
Sbjct: 698 RGGYGGGDRGGRGGYGGDRGRGGYG 722


>Z81120-1|CAB03342.1|  207|Caenorhabditis elegans Hypothetical
           protein T12D8.2 protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 715 KGGQGX--GXPXGRGXXGGXFXRGGKGPXEXLKSXRGG 608
           +GG+G   G   GRG   G F RGG+G        RGG
Sbjct: 100 RGGRGGNFGDRGGRGRGAGGFRRGGEGGRFNEGERRGG 137


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 609 PPRXLFXNSXGPFPPLXXXPPXCPLPXGXPXPWPPL 716
           PP  +      P PP+   PP  P P   P P PP+
Sbjct: 46  PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPM 81


>AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4c protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 535 HRPPPPLXQHHKN 573
           H+PPPP+  HH+N
Sbjct: 14  HQPPPPVPHHHQN 26


>AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4b protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 535 HRPPPPLXQHHKN 573
           H+PPPP+  HH+N
Sbjct: 14  HQPPPPVPHHHQN 26


>AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4a protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 535 HRPPPPLXQHHKN 573
           H+PPPP+  HH+N
Sbjct: 83  HQPPPPVPHHHQN 95


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 541 PPPPLXQHHKNSNASKXRXWPKPPPXXFLXIP 636
           PPPP    HK    S  +  P+P P     IP
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIP 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,632
Number of Sequences: 27780
Number of extensions: 271249
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)