Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O17
(1055 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 1.7
At1g26110.1 68414.m03186 expressed protein 30 2.2
At4g08230.1 68417.m01358 glycine-rich protein 30 3.0
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa... 29 5.2
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 5.2
At2g30560.1 68415.m03722 glycine-rich protein 29 6.8
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 9.0
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 28 9.0
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 9.0
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 9.0
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 9.0
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +3
Query: 570 KFXRLQXQXVAQTPPRXLFXNSXGPFPPLXXXPPXCPLPXGXPXPWPP 713
+F + A PP L P PP PP P P P P PP
Sbjct: 241 EFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPP 288
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 712 GGQGXGXPXGRGXXGGXFXRGGKG 641
GG+G G GRG GG + GG+G
Sbjct: 578 GGRGYGGYGGRGGGGGGYGYGGRG 601
>At4g08230.1 68417.m01358 glycine-rich protein
Length = 113
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 712 GGQGXGXPXGRGXXGGXFXRGGKGPXEXLKSXRG 611
GG G G G G GG RGG P L + RG
Sbjct: 60 GGMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRG 93
>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 257
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 197 CNHYKLQ*TKLTTTI--AFILCFRFRXEVWEVFSA 295
C YK++ K TTT+ +LC R E W + S+
Sbjct: 200 CKEYKMKGNKATTTVWLYVLLCMRNPMEAWRLLSS 234
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains leucine-rich
repeats, Pfam:PF00560; contains proline rich extensin
domains, INTERPRO:IPR002965
Length = 470
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +3
Query: 891 PPXPXPXPPXPXXXXXXXXXXXXXXXXXXXXXPXYPXSPPPXXSXPXXI 1037
PP P P PP P YP PPP S P +
Sbjct: 376 PPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYV 424
>At2g30560.1 68415.m03722 glycine-rich protein
Length = 171
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 715 KGGQGXGXPXGRGXXGGXFXRGGKG 641
KGG G G GRG GG +GG G
Sbjct: 14 KGGGGGGSGGGRGGGGGGGAKGGCG 38
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 535 HRPPPPLXQHHKNSNASKXRXWPKPPPXXFLXIPXALSPP 654
H PPPP H P PPP + P SPP
Sbjct: 594 HSPPPPAPVHSPPPPVHS----PPPPPPVYSPPPPVFSPP 629
>At3g25500.1 68416.m03171 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02181
Length = 1051
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 891 PPXPXPXPPXPXXXXXXXXXXXXXXXXXXXXXPXYPXSPPP 1013
PP P PP P P YP SPPP
Sbjct: 37 PPSPPSPPPLPKLPFSSTTPPSSSDPNASPFFPLYPSSPPP 77
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 600 AQTPPRXLFXNSXGPFPPLXXX--PPXCPLPXGXPXPWPP 713
A +PP +S P P PP PLP P P PP
Sbjct: 31 ASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPP 70
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 496 PXTXKXPRCLASFHRPPPPLXQHHKNSNASKXRXWPKPPP 615
P + PR ++ P PL +SN+S P PPP
Sbjct: 364 PSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPPP 403
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 496 PXTXKXPRCLASFHRPPPPLXQHHKNSNASKXRXWPKPPP 615
P + PR ++ P PL +SN+S P PPP
Sbjct: 371 PSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPPP 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,310
Number of Sequences: 28952
Number of extensions: 267801
Number of successful extensions: 1385
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2608357424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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