Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O16
(958 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.019
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.079
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.10
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.55
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 5.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +2
Query: 854 PLPTXXPXPX---PPPXPPXPXXXXPXXXXPPPXPP 952
P+P P P PPP PP P PPP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.5 bits (73), Expect = 0.045
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Frame = +2
Query: 848 LXPLPTXXPXPXPPPXP------PXPXXXXPXXXXPPPXPPXP 958
+ P P P P PPP P P P PPP PP P
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 854 PLPTXXPXPXPPPXPPXPXXXXPXXXXPPPXPPXP 958
P P P P P P P P PPP PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPP 768
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.079
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 951 GGXGGGXXXXGXXXXGXGGXGGGXGXGXXVGRG 853
GG GG G G GG GGG G GRG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG 41
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 957 GXGGXGGGXXXXGXXXXGXGGXGGGXGXGXXVGRG 853
G GG GG G G G G G G GRG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -2
Query: 957 GXGGXGGGXXXXGXXXXGXGGXGGGXGXGXXVGRGXR 847
G GG GGG G G GG GG G G RG R
Sbjct: 24 GRGGFGGG--RGGARGGGRGGARGGRG-GRGGARGGR 57
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 878 PXPPPXPPXPXXXXPXXXXPPPXPP 952
P PP PP P P PPP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 872 PXPXPPPXPPXPXXXXPXXXXPPPXP 949
P PPP PP P P PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1
Query: 958 GXRGGXGXXXXGGXGXXXXGGXRGGXGXGXXGWQR 854
G RGG G GG G GG RGG G G G R
Sbjct: 149 GSRGGFGGNSRGGFG----GGSRGGFGGGSRGGSR 179
Score = 30.3 bits (65), Expect = 0.42
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 952 RGGXGXXXXGGXGXXXXGGXRGGXGXGXXG 863
RGG G GG G GG RGG G G
Sbjct: 159 RGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 958 GXRGGXGXXXXGGXGXXXXGGXRGG 884
G RGG G GG GG RGG
Sbjct: 165 GSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.55
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 854 PLPTXXPXPXPPPXPPXPXXXXPXXXXPPPXP 949
P P P PPP P P PPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.9 bits (64), Expect = 0.55
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +2
Query: 872 PXPXPPPXP-PXPXXXXPXXXXPPPXPPXP 958
P P PPP P P P PP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 854 PLP-TXXPXPXPPPXPPXPXXXXPXXXXPPPXP 949
P+P T P P P PP P PPP P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Frame = +2
Query: 854 PLPTXXPXPXPPP--XPPXPXXXXPXXXXPPP--XPPXP 958
P P P PPP PP P PPP PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 854 PLPTXXPXPXPPPXPPXPXXXXPXXXXPPPXPP 952
P P+ P P P P P PP PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 872 PXPXPPPXPPXPXXXXPXXXXPPPXPPXP 958
P PP P P PPP PP P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 23.0 bits (47), Expect(2) = 3.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 857 LPTXXPXPXPPPXPP 901
LP+ P PPP PP
Sbjct: 183 LPSDYNPPPPPPPPP 197
Score = 22.2 bits (45), Expect(2) = 3.7
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Frame = +2
Query: 887 PPXPPX--PXXXXPXXXXPPPXPP 952
P PP P P PPP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +2
Query: 854 PLPTXXPXPXPPPXPPXPXXXXPXXXXPP-PXPPXP 958
P+P P P PP P P P PP P P P
Sbjct: 113 PVPEE-PLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +2
Query: 848 LXPLPTXXPXPXPPPXPPXPXXXXPXXXXPP-PXPPXP 958
L L P P PP P P P PP P P P
Sbjct: 94 LNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVP 131
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 857 LPTXXPXPXPPPXPPXP 907
LPT P PPP PP P
Sbjct: 898 LPTIITHPTPPPPPPLP 914
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 854 PLPTXXPXPXPPPXPPXP 907
P P P PPP PP P
Sbjct: 802 PFKAPPPAPLPPPAPPLP 819
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 942 GGGXXXXGXXXXGXGGXGGGXGXGXXVGRG 853
GGG G GG GG G G GRG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 842 SXLXPLPTXXPXPXPPPXPPXPXXXXPXXXXPPPXP 949
S L P PT P P P PP P P PP P
Sbjct: 135 SELRP-PTSAP-PRPSIPPPSPASAPPIPSKAPPIP 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,040
Number of Sequences: 5004
Number of extensions: 23069
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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