Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O15
(957 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.019
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.32
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.97
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.0
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 6.8
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 26 6.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPPGPP---PVXXPXGPPSPPN 797
P+P LPP+ P PP P P+ P PP PP+
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Score = 29.9 bits (64), Expect = 0.55
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +3
Query: 693 LGXPSPXXLPPTXXPXX-PPGPPPVXXPXGPPSPP 794
LG S PP P PP PP P PPS P
Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 693 LGXPSPXXLPPTXXPXXPPGPPPVXXPXGPPSPP 794
+G P+ LPP+ P PP P P PP PP
Sbjct: 441 MGAPAAPPLPPSA-PIAPP--LPAGMPAAPPLPP 471
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.019
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPPGPPPVXXPXGPPSPP 794
P P + PT P P PPP GPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPPGPPPVXXPXGPPSPP 794
P P P P PP PPP GPP PP
Sbjct: 750 PVPPPAPIMGGPPPPP-PPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 693 LGXPSPXXLPPTXXPXXPPGPPP 761
+G P P PP PP PPP
Sbjct: 758 MGGPPPPPPPPGVAGAGPPPPPP 780
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.32
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 793 GGXGGPXGXXTGGGPGGXXGFXVGGRXXGEGXPKW 689
GG G G GG GG GF GG G G P W
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGF--GGGPGGHGGPGW 273
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 793 GGXGGPXGXXTGGGPGGXXGFXVGGRXXGEG 701
GG GG G +GG P G GF G GEG
Sbjct: 188 GGFGG-FGGGSGGPPPGPGGFGGFGGFGGEG 217
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.97
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 717 LPPTXXPXXPPGPPPVXXPXGPPSPP 794
LPP P PP PP P PP PP
Sbjct: 4 LPPGNPPPPPP-PPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 892 PKPPXNXPRFGXXXHSPXPPPP 957
P PP P F P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 705 SPXXLPPTXXPXXPPGPPPVXXPXGPPSPP 794
+P PP PP PP+ P GPPS P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPM--PAGPPSAP 1731
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 720 PPTXXPXXPPGPPPVXXPXGPPSPP 794
PP PP PPP+ P P +PP
Sbjct: 1699 PPQMSAPTPP-PPPMSVPPPPSAPP 1722
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 693 LGXPSPXXLPPTXXPXXPP-GPPPVXXPXGPPSPPN 797
+ P P PP P PP PPP PS PN
Sbjct: 1712 MSVPPPPSAPP--MPAGPPSAPPPPLPASSAPSVPN 1745
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 793 GGXGGPXGXXTGGGPGGXXGFXVGGRXXGEG 701
G GG G GG GG GF GGR G G
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFG-GGRGRGRG 477
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPPGPPPVXXPXGPPSPP 794
P+P PT P PPPV P PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 97 QNEILENFRFRVRYCFRHGFGLGSSRQLLQGILKKWVRGFETPSSARLQQSTPWQKQKLS 276
Q +L + + CF HG+G+ R L ++K + G + A+ + +S
Sbjct: 542 QRLLLALILYELGVCFMHGWGITRDRYLALHLIK--LSGAWGDADAQFEAGLQMSLGAVS 599
Query: 277 DKD 285
DKD
Sbjct: 600 DKD 602
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 67 RTLSFDFAKIQ----NEILENFRFRVRYCFRHGFGLGSSRQLLQGILKKWVRG 213
+ ++ DF+ +Q N + +NF F G G S ++ + K W+RG
Sbjct: 8 KAIAADFSSVQFRFDNYLKQNFNFGRSALLNSGNGRDSGSKMGSVVCKHWLRG 60
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPPGPP--PVXXPXGPPSPPN 797
P P PP PP P PV P PS P+
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = +3
Query: 702 PSPXXLPPTXXPXXPP--GPPPVXXPXG-PPSP 791
P P P + P P G PPV P G PP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Frame = +3
Query: 702 PSPXXLPPTXXP--XXPPGP------PPVXXPXGPPSPP 794
P+P +PP P PP P PPV P G P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,778
Number of Sequences: 5004
Number of extensions: 31721
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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