Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O14
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.048
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.048
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 868 IXPPTS-PGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPS-PCXP 993
           + PPTS P R  IPPPS  +  P+    P  P   P P+ P  P
Sbjct: 137 LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +1

Query: 865  SIXPPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXP 978
            S  PP        PPP      P +P  P GP   P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  WFSEHMRYLSLIRKVYXIYKLK*NPTKNRNNY 164
           W +EHM  +S ++    IY+L   PTK +  Y
Sbjct: 38  WLNEHMLEVSKLQLESDIYELVRTPTKIKEKY 69


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +1

Query: 868 IXPPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
           I P  +P    +PPP+     P  P  P G      P P  P
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 659 LPXPPXPXPPACPP 700
           LP PP P PP  PP
Sbjct: 235 LPAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,604
Number of Sequences: 5004
Number of extensions: 38344
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)