Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O14
(1001 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical pr... 35 0.10
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 32 0.74
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 32 0.74
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 30 3.0
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 3.0
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 29 5.2
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 29 5.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.9
>Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical
protein Y41E3.4 protein.
Length = 786
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 213 EQKAKETLKNANVTKVLLAALDEVQLQSLPLGA--GILIYHLPTKIKPQTMSXLNXICQY 386
+ K ETLKN +T+ + ++ ++ +S + G L+Y L TK+KPQ + + +Y
Sbjct: 14 DSKVAETLKNVKLTETI-GSIVKLASESGEISKQKGTLLYQLATKLKPQVAAHTPLVVKY 72
Query: 387 I 389
I
Sbjct: 73 I 73
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 31.9 bits (69), Expect = 0.74
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 427 GXLGNVKSXFPDAIYWQIXFXXLXV*GLIL--VGRW*IKMPAPSGSDCNCTSSNAASNTL 254
G G + + FP +WQ+ F + G ++ V W IK +P + + T+ +A+ +
Sbjct: 261 GDFGKIWNHFPTWSFWQLLFIS-GIFGFVMNYVTGWQIKATSPLTHNISATAKSASQTVI 319
Query: 253 VTFAFFSV 230
F + V
Sbjct: 320 AVFLYSEV 327
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 31.9 bits (69), Expect = 0.74
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 427 GXLGNVKSXFPDAIYWQIXFXXLXV*GLIL--VGRW*IKMPAPSGSDCNCTSSNAASNTL 254
G G + + FP +WQ+ F + G ++ V W IK +P + + T+ +A+ +
Sbjct: 261 GDFGKIWNHFPTWSFWQLLFIS-GIFGFVMNYVTGWQIKATSPLTHNISATAKSASQTVI 319
Query: 253 VTFAFFSV 230
F + V
Sbjct: 320 AVFLYSEV 327
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 1001 GXXGXQGDGXGVXXGPXGXDGERGXXVXCXGGGMXCLPGEVGG 873
G G G G G GP G G+ G G G PG+ GG
Sbjct: 277 GPDGQPGHGGGGQPGPQGPPGDDGHPGEDGGAGGPGQPGQDGG 319
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 874 PPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
P SP R PPP P P+ P P P P P
Sbjct: 538 PEPSPVREPTPPPPPREPTPREPTPEPEPVREPTPPPPPP 577
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 880 TSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
T P H + P +H +SPS P P +P P P P
Sbjct: 419 TDPLIH-LSPTAHQPDESISPSAPPVPSSSPLPPPLTP 455
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 880 TSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
T P H + P +H +SPS P P +P P P P
Sbjct: 419 TDPLIH-LSPTAHQPDESISPSAPPVPSSSPLPPPLTP 455
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 880 TSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
T P H + P +H +SPS P P +P P P P
Sbjct: 419 TDPLIH-LSPTAHQPDESISPSAPPVPSSSPLPPPLTP 455
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 874 PPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
PP G P P P SP+ P GP P P P
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 874 PPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
PP G P P P SP+ P GP P P P
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 662 PXPPXPXPPACPP 700
P PP P PP CPP
Sbjct: 64 PPPPPPPPPMCPP 76
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 874 PPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
PP G P P P SP+ P GP P P P
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 874 PPTSPGRHXIPPPSHXTXXPLSPSXPXGPXXTPXPSPCXP 993
PP G P P P SP+ P GP P P P
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,313
Number of Sequences: 27780
Number of extensions: 250809
Number of successful extensions: 1188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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