Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O13
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.001
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.18
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.24
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.75
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.98
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.9
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 26 9.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 809 APPPPTXXALFXTXPPXFTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXP 967
+PPPP + T P P PP P PP P PP PPP P
Sbjct: 731 SPPPPPPAVIVPTPAP--APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 33.9 bits (74), Expect = 0.035
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPXLXPPXXPPXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
PPPPP P P P PP P P PPP PP P
Sbjct: 732 PPPPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.43
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPXLXPPXXPPXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
PPPP + P P P + PP P P PPP PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 714 PXPPLXXXXXPXXPXXXXXXPPXXXXXXXGXXPPPPPXLXPFXQPXPPXLXP 869
P PP P PP PPPPP + P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +3
Query: 774 PPXXXXXXXGXXPPPPPXLXPFXQPXPPXLXPPXXPPXXPXXXXPXXPPP 923
PP P P P P P PP PP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +2
Query: 719 PPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPP 871
PP P P P G PPPP A PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXP-XXXPXXPXXXXXPXXXXXSXXXGXXAPPPP 823
P PP P P P P P P G PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +2
Query: 809 APPPPTXXALFXTXPPXFTPPXGPPXXPXXPXPPXTPXPP 928
AP P A PP PP PP PP P PP
Sbjct: 747 APIPVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.006
Identities = 26/93 (27%), Positives = 28/93 (30%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTP 868
P P P+ P P P P P S APP P + PP P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA----APPVPAPSS---GIPPVPKP 1184
Query: 869 PXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXP 967
G P P P P P PPP P
Sbjct: 1185 AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 32.3 bits (70), Expect = 0.11
Identities = 22/89 (24%), Positives = 25/89 (28%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTP 868
P P P+ P P P P P S PP P + + P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA---- 1078
Query: 869 PXGPPXXPXXPXPPXTPXPPXTXQXFPPP 955
P G P P P P P P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 29.1 bits (62), Expect = 0.98
Identities = 22/95 (23%), Positives = 23/95 (24%), Gaps = 1/95 (1%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTP 868
P P P+ P P P P P P P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 869 PXGPPXXPXXPXP-PXTPXPPXTXQXFPPPXXXPS 970
P P P P P PP PP PS
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
Score = 28.3 bits (60), Expect = 1.7
Identities = 25/105 (23%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFT- 865
P P PT P P P P P S APP P + P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101
Query: 866 ----------PPXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXPS 970
PP P P PP PP PS
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPS 1146
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/74 (27%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Frame = +3
Query: 714 PXPPLXXXXXPXXPXXXXXXPPXXXXXXXGXXPPPPPXLXPFXQP---XPPXLXPPXXPP 884
P P P P PP PPP P +P PP P PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 885 -XXPXXXXPXXPPP 923
P P P P
Sbjct: 1219 VPTPSAGLPPVPVP 1232
Score = 27.1 bits (57), Expect = 4.0
Identities = 25/93 (26%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Frame = +2
Query: 701 PTXXPX---PPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPP 871
PT P PP P P APP P A PP P
Sbjct: 982 PTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA---DAPPIPVPS 1038
Query: 872 XGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXPS 970
PP P P P PPP PS
Sbjct: 1039 TAPP-VPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +2
Query: 809 APPPPTXXALFXTXPPXFTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXP 967
APP P P TPP PP P P P P P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083
Score = 26.2 bits (55), Expect = 6.9
Identities = 21/92 (22%), Positives = 22/92 (23%), Gaps = 3/92 (3%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPP---PTXXALFXTXPPX 859
P P P+ P P P P PPP P PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 860 FTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPP 955
P PP P P P P P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 9.2
Identities = 21/97 (21%), Positives = 21/97 (21%), Gaps = 6/97 (6%)
Frame = +2
Query: 695 PPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXP------P 856
PPP P P P APP P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 857 XFTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXP 967
P P P P P P P P P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.009
Identities = 25/92 (27%), Positives = 28/92 (30%)
Frame = +2
Query: 695 PPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPPX 874
PPP P P P PP PT +L + PP PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL-PPS 434
Query: 875 GPPXXPXXPXPPXTPXPPXTXQXFPPPXXXPS 970
PP P P P PP P P P+
Sbjct: 435 APPSLPMG-APAAPPLPPSAPIAPPLPAGMPA 465
Score = 33.9 bits (74), Expect = 0.035
Identities = 26/89 (29%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Frame = +2
Query: 689 PXPPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPP-PPTXXALFXTXPPXFT 865
P PPP P P P G AP PP A + PP T
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA--IPGRSAPALPPLGNASRTSTPPVPT 419
Query: 866 PPXGPPXXPXXPXPPXTPXPPXTXQXFPP 952
PP PP P P P P PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 33.1 bits (72), Expect = 0.060
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +2
Query: 704 TXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPP-PTXXALFXTXPPXFTPPXGP 880
T P P P P P P S G A PP P + P P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM--PAAP 467
Query: 881 PXXPXXPXPPXTPXP 925
P P P PP P P
Sbjct: 468 PLPPAAPAPPPAPAP 482
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Frame = +3
Query: 774 PPXXXXXXXGXXP-PPPPXLXPFXQPXPPXLXPPXXPPXXPXXXXPXXPP 920
PP P P PP L P P P PP P P P PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP--AAPPLPP 451
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXP-PXLXPPXXPPXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
PP PP + P P L P PP P PP +P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Frame = +2
Query: 815 PPPTXXALFXTXPPXFTPPXG-----PPXXPXXPXPPXTPXPPXTXQXFPP 952
PP +L PP PP PP P P P + P PP
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPP 291
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPX--------LXPPXXPPXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
PPPPP + PP L PP PP PP R PP + P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 851 PPXFTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPP 955
PP + P PP P PP P P PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.43
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 818 PPTXXALFXTXPPXFTPPXGPPXXPXXP-XPPXTPXPPXTXQXFP 949
PP A PP PP PP P P PP P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPX-LXPPXXP-PXXPXXXXPXXPPP 923
PPPPP P PP PP P P P P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 816 PPPXLXPFXQPXPPXLXPPXXPPXXPXXXXPXXPPP 923
PP P P P + PP P P PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Frame = +2
Query: 866 PPXGPPXXPXXPXPPX--TPXPPXTXQXFPPPXXXP 967
P PP P PP P PP PPP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721
Score = 26.6 bits (56), Expect = 5.3
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +3
Query: 801 GXXPPPPPXLXPFXQPX---PPXLXPPXXPPXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
G P P P +P PP + P PP P P PPP PP A P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPP--PPMSVP--PPPSAPPMPAGPPSAPP 1732
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.24
Identities = 25/78 (32%), Positives = 25/78 (32%)
Frame = -1
Query: 922 GGGXXGXXXXGXXGGXXGGXKXGGXGXKKGXXCGGGGGXXPXXXXXXXGGXXXXXXGXXG 743
GGG G GG G GG G G G GGG P GG G G
Sbjct: 194 GGGSGGPPP--GPGGFGGFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGFGGGPGGFGG 249
Query: 742 XXXXXXGGXGXXCXGXXG 689
GG G G G
Sbjct: 250 GLGGFGGGPGGFGGGPGG 267
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.24
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPXLXPPXXP--PXXPXXXXPXXPPPXRXQXXFSPPXAXP 965
PP P L P QP P PP P P P PPP Q + + P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +3
Query: 690 PXXPXHXXPXPPLXXXXXPXXPXXXXXXPPXXXXXXXGXXPPPPPXLXPFXQPXPPXLXP 869
P P P P P PP PP P L P PP + P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 870 P 872
P
Sbjct: 204 P 204
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 809 APPPPTXXALFXTXPPXFTPPXGPPXXPXXPXPPXTPXPPXTXQXFPPPXXXP 967
AP PPT + PP P P P P PP + P P P
Sbjct: 127 APAPPTPQS-------ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/92 (23%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Frame = +2
Query: 698 PPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPPXG 877
PPT P P P P P + PPP A + P + P
Sbjct: 139 PPTSAPPRPSIPPPSPASA-----PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193
Query: 878 PPXXPXX-PXPPXTPXPPXTXQXFPPPXXXPS 970
P P P PP + P P P+
Sbjct: 194 VPPMPPKVPPPPLSQAPVANTSSRPSSFAPPA 225
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -2
Query: 927 GGXGVXGGX-GXXGXXGGPXGGVKXGGXVXKRAXXVGGGGA 808
G G GG G G GG GG + GG R G GGA
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGA 53
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 966 GXXXGGGKXWXVXGGXGVXGGXGXXGXXGGPXGGVKXGGXV 844
G GGG+ G G G G G G GG K G V
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -1
Query: 919 GGXXGXXXXGXXGGXXG-GXKXGGXGXKKGXXCGGGGG 809
GG G G GG G G GG G G G GG
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = -1
Query: 964 GXAXGGEXLXCXRXGGGXXGXXXXGXXGGXXGGXKXGGXGXKKGXXCGGGGG 809
G GG GG G G GG GG + G G +G GG G
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPP 857
PPPPP P QP PP
Sbjct: 12 PPPPPGFEPPSQPPPP 27
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 851 PPXFTPPXGPPXXPXXPXPPXTPXPP 928
PP PP PP P P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 878 PPXXPXXPXPPXTPXPPXTXQXFPPP 955
PP P P PP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 801 GXXPPPPPXLXPFXQPXPPXLXPPXXPPXXP 893
G PPPPP PP PP PP P
Sbjct: 7 GNPPPPPP---------PPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 810 PPPPPXLXPFXQPXPPXLXPPXXPP 884
PPPPP F P P PP PP
Sbjct: 9 PPPPPPPPGFEPPSQP---PPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 851 PPXFTPPXGPPXXPXXPXPPXTPXPPXT 934
PP +TP P P PP T P T
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQST 251
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 4.0
Identities = 21/87 (24%), Positives = 22/87 (25%)
Frame = +2
Query: 695 PPPTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPPX 874
P P PP P P P P PP + P P
Sbjct: 599 PEAPSVPQPPVAPVA-PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPV 657
Query: 875 GPPXXPXXPXPPXTPXPPXTXQXFPPP 955
P P P PP P P PP
Sbjct: 658 -VPEAPSVPQPPAAPVVPEVPSVPQPP 683
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = +2
Query: 809 APPPPTXXALFXTXPPXFT-----PPXGPP 883
APPPP AL PP PP GPP
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Frame = +2
Query: 701 PTXXPXPPXXPXXXPXXPXXXXXPXXXXXSXXXGXXAPPPPTXXALFXTXPPXFTPPXGP 880
P P P P P + PPPPT ++ + P +PP P
Sbjct: 872 PMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPT-ASMTASAPAIASPP--P 928
Query: 881 PXXPXXPXPP---XTPXPPXTXQXFPPP 955
P PP T PP P P
Sbjct: 929 PKVGETYHPPTASGTRVPPVQQPSHPNP 956
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 539 MEKRQAXGPFLRFLAFCWPFAHMFFPALSPDSVDN 435
++K Q+ G +L + +H+F+ SPD V N
Sbjct: 369 IKKYQSRGRYLHIFSHIRKTSHVFYAIASPDIVTN 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,428
Number of Sequences: 5004
Number of extensions: 36255
Number of successful extensions: 295
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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