Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O11
         (1006 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   32   0.84 
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.9  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   3.4  
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)                29   7.9  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 31.9 bits (69), Expect = 0.84
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 715 SXXPXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
           S  P PP    PPP           G A  PP  P    PPP
Sbjct: 335 SQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPP 376


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 196 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 333
           + IEH  +   K  +QQF+S  K+ D  D S   K+  + ++  L+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 189 VGSVASHHRSLGQSDAGEENYELGGHDVLSRD*VRRRCEPDCNTEECVKILRIPXSEVG 13
           V S+ +H   LG +      Y +GGHD  S      R +PD      V  +  P S VG
Sbjct: 359 VTSMNTHRHGLGVAALNGPLYAIGGHDGWSYLSTVERYDPDTKQWSFVAAMSTPRSTVG 417


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +1

Query: 724  PXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
            P PP    PPP           G +  PP  P    PPP
Sbjct: 956  PPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 712 LSXXPXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
           ++  P PP P  PPP                PP  P    PPP
Sbjct: 361 INMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPP 403



 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 724 PXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPP 837
           P PP P  PPP             A  PP  P    PP
Sbjct: 395 PPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432


>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
          Length = 337

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = -3

Query: 449 GPXGAPRPCAXCXASTVPKPPWPCRSXXXXXXXXXXXXXLSCCSTDSEPSFQALLKSCAS 270
           G  G P P     +  +P PP  C+S                C  D  PS    L +C S
Sbjct: 180 GSDGIPSPLVAYGSDGIPSPPVACKSDGIPSTLV-------ACKFDGIPS---SLVACKS 229

Query: 269 FDLVSELNCC-SKVLWNSLVWC 207
             + S L  C S  + +SLV C
Sbjct: 230 DGITSSLAACESDGITSSLVGC 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,005,138
Number of Sequences: 59808
Number of extensions: 323684
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 3003134652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)