Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O11
         (1006 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    30   2.1  
At2g48160.1 68415.m06031 PWWP domain-containing protein                30   2.8  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   8.5  
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    28   8.5  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    28   8.5  
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida...    28   8.5  

>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 724 PXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
           P PP P  PPP                PP  P    PPP
Sbjct: 390 PPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPP 428


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 69   PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 227
            P+R++  LS ST+H+ G +    S ++L  S P++DG+  + R    H  PH   P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 724  PXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
            P PP P  P P             A  PP  P    PPP
Sbjct: 1074 PLPPSPPPPSPPLPPSSLPPPPPAALFPPLPPPPSQPPP 1112


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 724 PXPPXPXXPPPXXXXXXXXXXXGXAXXPPXGPAXXXPPP 840
           P PP    PPP             A  PP  P    PPP
Sbjct: 138 PPPPTVKPPPPPVVTPPPPTPTPEAPCPPPPPTPYPPPP 176


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1240

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 614 KSW*AXLILGASFSLVSCXLEDTFXXNFW 528
           +SW A ++LG S SL++C    T   NFW
Sbjct: 894 RSWLAGIVLGTSRSLITC----TSALNFW 918


>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative nearly identical to ACC
           oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
          Length = 320

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 303
           D    IE  TK+ +KT  EQ+FN + KSK   +     +D
Sbjct: 47  DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,089
Number of Sequences: 28952
Number of extensions: 248639
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2460538344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)