Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O09
         (954 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.87 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.1  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = +1

Query: 121 KLKMVSKAELACVYSALILVDD--------DVAVIGEKISTILKAAAVDVEPYWPGLFAK 276
           ++KM  K EL C+ + ++   D        +V ++ EKI  +L+       P  PG FAK
Sbjct: 305 EMKM-DKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAK 363

Query: 277 AL 282
            L
Sbjct: 364 LL 365


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 552 NXPPXPPPP 578
           N PP PPPP
Sbjct: 729 NAPPPPPPP 737



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 552 NXPPXPPPPP 581
           N  P PPPPP
Sbjct: 728 NNAPPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 534 TDFINXNXPPXPPPPP 581
           T F+  N PP P  PP
Sbjct: 167 TGFLCNNYPPLPQVPP 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,089
Number of Sequences: 336
Number of extensions: 3066
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)