Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O09
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 83 4e-17
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 74 3e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 71 2e-13
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.61
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 3.9
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 3.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 3.9
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 27 5.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 5.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.8
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 9.0
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 83.4 bits (197), Expect = 4e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVIGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 312
+S +ELA YSALIL D+ + + +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 313 NIGSGVGAAP 342
NIGSG GAAP
Sbjct: 61 NIGSGAGAAP 70
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.1 bits (174), Expect = 3e-14
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVIGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 312
+S +ELA YSALIL D+ + + +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 313 NIGSGVGA 336
NIGS A
Sbjct: 61 NIGSAAAA 68
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVIGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 312
+S +ELA Y+ALIL D+ + + +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 313 NIGS-GVGAAP 342
NIGS G +AP
Sbjct: 61 NIGSAGAASAP 71
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 0.61
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 552 NXPPXPPPPP 581
N PP PPPPP
Sbjct: 188 NPPPPPPPPP 197
Score = 22.6 bits (46), Expect(2) = 0.61
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 561 PXPPPPPXXP 590
P PPPPP P
Sbjct: 238 PPPPPPPTLP 247
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 336 STHSRADVGDQVTDIDAFQG-FGEQTWPIWLYIYSRR 229
S HSRAD + T D F+ G T I Y+ +RR
Sbjct: 166 SIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRR 202
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 22.6 bits (46), Expect(2) = 5.8
Identities = 8/22 (36%), Positives = 9/22 (40%)
Frame = +3
Query: 666 DPPXXXTXPSXXXSXHPPPPXP 731
+PP P PPPP P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
Score = 22.6 bits (46), Expect(2) = 5.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 711 HPPPPXPXPXXNP 749
+PPPP P P P
Sbjct: 8 NPPPPPPPPGFEP 20
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 558 PPXPPPPPXXP 590
PP PPPP P
Sbjct: 5 PPGNPPPPPPP 15
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 558 PPXPPPPPXXP 590
P PPPPP P
Sbjct: 6 PGNPPPPPPPP 16
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 537 DFINXNXPPXPPPPP 581
D N PP PPPPP
Sbjct: 299 DSANGGLPPPPPPPP 313
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 349 SGPEQHPLQSRCW*SGHGH*CLPRLWRTDL 260
S P+ + + G+G CLP LWR D+
Sbjct: 387 SSPDLQAVYPKLKGGGNGVQCLPLLWRQDI 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,364
Number of Sequences: 5004
Number of extensions: 41320
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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