Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O09
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 109 4e-24
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 105 5e-23
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 24 0.32
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 24 0.33
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 29 3.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 4.1
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 6.5
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 6.5
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 6.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 24 7.0
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 8.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 26 9.3
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 109 bits (261), Expect = 4e-24
Identities = 48/71 (67%), Positives = 61/71 (85%)
Frame = +1
Query: 130 MVSKAELACVYSALILVDDDVAVIGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 309
M S ELACVY+ALIL DD+VA+ GEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 310 TNIGSGVGAAP 342
T++ SG G+ P
Sbjct: 61 TSVSSGAGSGP 71
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 105 bits (252), Expect = 5e-23
Identities = 47/71 (66%), Positives = 60/71 (84%)
Frame = +1
Query: 130 MVSKAELACVYSALILVDDDVAVIGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 309
M S ELACVY+ALIL DD+VA+ GEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 310 TNIGSGVGAAP 342
T++ SG G+ P
Sbjct: 61 TSVSSGAGSGP 71
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 24.2 bits (50), Expect(3) = 0.32
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 669 PPXXXTXPSXXXSXHPPPPXPXP 737
PP P+ PPPP P P
Sbjct: 635 PPPPMGLPAVGAGAPPPPPPPPP 657
Score = 23.8 bits (49), Expect(3) = 0.32
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 543 INXNXPPXPPPPP 581
I+ PP PPPPP
Sbjct: 625 ISSAAPPPPPPPP 637
Score = 21.8 bits (44), Expect(3) = 0.32
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 558 PPXPPPPPXXP 590
PP PPPP P
Sbjct: 632 PPPPPPPMGLP 642
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 24.2 bits (50), Expect(3) = 0.33
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 669 PPXXXTXPSXXXSXHPPPPXPXP 737
PP P+ PPPP P P
Sbjct: 461 PPPPMGLPAVGAGAPPPPPPPPP 483
Score = 23.8 bits (49), Expect(3) = 0.33
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 543 INXNXPPXPPPPP 581
I+ PP PPPPP
Sbjct: 451 ISSAAPPPPPPPP 463
Score = 21.8 bits (44), Expect(3) = 0.33
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 558 PPXPPPPPXXP 590
PP PPPP P
Sbjct: 458 PPPPPPPMGLP 468
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 947 GLWGGAGGGXXXXXXGERXVGXXRRGXG 864
G WGG GGG G G RRG G
Sbjct: 77 GGWGGRGGGWGRGGGGRGFYGGGRRGWG 104
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 24.2 bits (50), Expect(2) = 4.1
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +3
Query: 669 PPXXXTXPSXXXSXHPPPPXPXP 737
PP P PPPP P P
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPP 584
Score = 23.4 bits (48), Expect(2) = 4.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 552 NXPPXPPPPPXXP 590
N P PPPPP P
Sbjct: 557 NVPIPPPPPPPLP 569
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 24.2 bits (50), Expect(2) = 7.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +3
Query: 537 DFINXNXPPXPPPPP 581
+ + PP PPPPP
Sbjct: 61 NIVKATPPPPPPPPP 75
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 561 PXPPPPPXXP 590
P PPPPP P
Sbjct: 84 PPPPPPPPPP 93
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVIGEKISTILK 228
+S+ + C++SA +++ +D+ +IG+ +LK
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/64 (26%), Positives = 19/64 (29%)
Frame = +3
Query: 558 PPXPPPPPXXPXXXXXXXXXXXXXXXXXXXXEGLXXDPPXXXTXPSXXXSXHPPPPXPXP 737
P PPPPP G+ PP PS +PPPP P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY--PSAGPGMYPPPPPSRP 371
Query: 738 XXNP 749
P
Sbjct: 372 PAPP 375
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/64 (26%), Positives = 19/64 (29%)
Frame = +3
Query: 558 PPXPPPPPXXPXXXXXXXXXXXXXXXXXXXXEGLXXDPPXXXTXPSXXXSXHPPPPXPXP 737
PP PPPPP + PP P PPPP P P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMC-----PPPPPPMP 82
Query: 738 XXNP 749
+P
Sbjct: 83 SYSP 86
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/64 (26%), Positives = 19/64 (29%)
Frame = +3
Query: 558 PPXPPPPPXXPXXXXXXXXXXXXXXXXXXXXEGLXXDPPXXXTXPSXXXSXHPPPPXPXP 737
P PPPPP G+ PP PS +PPPP P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY--PSAGPGMYPPPPPSRP 381
Query: 738 XXNP 749
P
Sbjct: 382 PAPP 385
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 25.8 bits (54), Expect(2) = 9.3
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 669 PPXXXTXPSXXXSXHPPPPXPXPXXNP 749
PP P S PPPP P P P
Sbjct: 497 PPPPPLPPIATPSSVPPPPPPPPPPPP 523
Score = 20.6 bits (41), Expect(2) = 9.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +3
Query: 543 INXNXPPXPPPPP 581
++ + PP PP PP
Sbjct: 492 VSKSPPPPPPLPP 504
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,311
Number of Sequences: 27780
Number of extensions: 299403
Number of successful extensions: 2173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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