Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O08
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.9  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   9.0  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 FDRSRWSQSVQIQHR*PVHRATR 244
           F R+ W++ V  Q R P+HRA R
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHR 203


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 339 PYCMDSCMNSDHYCPNCNAYIGT 407
           PY +++C N   Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 261 DFGHDRRVARWTGYLCWIWTDCDHLDRSKL 172
           D    R+ A W  Y    W DC H   +++
Sbjct: 590 DGNRRRKAAFWFAYSAGFWRDCGHCKMAEI 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,162
Number of Sequences: 5004
Number of extensions: 57585
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)