Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O08
(955 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 5.5
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 5.5
06_03_0743 + 24069752-24070483,24071890-24072345 29 5.5
02_04_0633 - 24616563-24617279 29 5.5
01_01_0503 - 3693855-3694301 29 5.5
11_02_0038 - 7631462-7634428,7635975-7636250 29 7.2
03_02_0776 + 11103195-11103812 29 7.2
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857... 28 9.5
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 28 9.5
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 562 CKIYSTELYNIKPNLRLIM*I*NIKTKLYKCKSSNGIQEY 443
C YS EL+N PN+R I + N T +S + Q+Y
Sbjct: 92 CNPYSAELFNAGPNIRTIPFLCN-STSSSSAQSKDSTQDY 130
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 189 DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHR 296
DG +S S S+ HD +H+ + HE+ H+
Sbjct: 740 DGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPAHK 775
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.1 bits (62), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 225 LSIVPRVGHDQNHDQSQHEDSHH 293
LS+ P HD +H +H+ HH
Sbjct: 65 LSLTPSTTHDDDHHHRRHDQDHH 87
>02_04_0633 - 24616563-24617279
Length = 238
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -3
Query: 485 ETI*VQIIEWHTGIRNTFTIMKLSCIGSNVGVAVWTVMVRIHARVHAVWQTYARQHMH 312
ET ++ W G+R + + + G + V V+I +H+ + +Y +H+H
Sbjct: 134 ETKEQHVVAWGAGVRLPGSALDALAADARRGAEAFDVAVKIPTVIHSGYHSYDPRHVH 191
>01_01_0503 - 3693855-3694301
Length = 148
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -3
Query: 419 LSCIGSNVG----VAVWTVMVRIHARVHAVWQTYARQHMH 312
L+C+G+ G +A+ V V + ARV A+W R ++H
Sbjct: 106 LACVGTGAGFTFAIALDCVFVVLIARVLAIWSRLVRTYLH 145
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.7 bits (61), Expect = 7.2
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = -3
Query: 701 IDKCRMLNNLVGFSENNHLHSGT*LDDLDDEEIKHIHHRXXXXKXKLQNILHRAIQH*AE 522
I+K +LN+L GF + + D + EE+ H+ +L+N + +
Sbjct: 732 INKLSLLNDLQGFPVGHSYVNTRKQDGWNLEELGHLSEMKRLGMIRLENAMPCGTSSLLD 791
Query: 521 LK-IDHVNMKYKNETI*VQIIEWHTGIRNTFTIMKLSCIGSNVGVA 387
K + +N++ T +E T I N F +K C ++ +A
Sbjct: 792 KKHLKFLNLRCTTHTKESYTMEDITNIENVFDELKPPCNLEDLSIA 837
>03_02_0776 + 11103195-11103812
Length = 205
Score = 28.7 bits (61), Expect = 7.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 149 ASRYCVVESFDRSRWSQSVQIQHR*PVHRATRRS*PKSRPKPARRLTSSH*SCVCACVAL 328
A R V + R+RWS+++ HR + A R ++ P+R +SS A
Sbjct: 81 ADRALAVSARGRTRWSRAILASHRRRIQAARRARLREAISPPSRHPSSSSGKGPKAPALA 140
Query: 329 RMSAILHGLV 358
R + +L LV
Sbjct: 141 RKAKVLGRLV 150
>09_04_0244 -
15984862-15984978,15985054-15985119,15985701-15985793,
15987284-15987410,15988710-15988840,15989485-15989766,
15989852-15989985,15990083-15990292,15990456-15990486
Length = 396
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 388 ATPTLEPIQDNFIIVNVLRIPVCHSMICTYIVS 486
A T+EP Q + +V + +PVC+SM+C +++
Sbjct: 150 AVVTIEP-QFDLPLVKLHDVPVCYSMLCRPVIA 181
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 GHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 299
G++ S SS + V R GH Q Q + E H+T
Sbjct: 152 GNASSSSSASAAAAVARHGHQQQQQQQRSETRWHKT 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,632
Number of Sequences: 37544
Number of extensions: 363351
Number of successful extensions: 958
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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