Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O08
         (955 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    29   6.0  
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    28   7.9  

>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 474 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSNGPNSCTSPC 346
           S  H   Y+N + +  YE  L  FQC    L   G  +C + C
Sbjct: 405 STKHDDRYKNLKMLFPYEEFLKFFQCEVFDLSPRGLVNCGNSC 447


>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 276 HEDSHHRTDPVFVHVLPCVCLPYCMDSCMNSDHYCPNCN 392
           + ++HH    +F H+     LP   ++C  SDH  PN N
Sbjct: 54  NNNNHHHQHMLFPHMSSL--LPQTTENCFRSDHDQPNNN 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,596
Number of Sequences: 28952
Number of extensions: 296734
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)