Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O07
         (1128 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZWM2 Cluster: Glycine-rich protein-2; n=2; Cucumis sa...    39   0.21 
UniRef50_A7SMB3 Cluster: Predicted protein; n=1; Nematostella ve...    35   4.4  
UniRef50_UPI0000E46741 Cluster: PREDICTED: similar to DNA repair...    34   5.8  

>UniRef50_Q9ZWM2 Cluster: Glycine-rich protein-2; n=2; Cucumis
            sativus|Rep: Glycine-rich protein-2 - Cucumis sativus
            (Cucumber)
          Length = 261

 Score = 39.1 bits (87), Expect = 0.21
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -3

Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMGXXA 851
            GG G G   +G RG+G G  GG G      G      G GGG   G+ +G  A
Sbjct: 141  GGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGVGGGA 193


>UniRef50_A7SMB3 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 218

 Score = 34.7 bits (76), Expect = 4.4
 Identities = 21/62 (33%), Positives = 21/62 (33%)
 Frame = -3

Query: 1045 GXENXGREXXPXGGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAX 866
            G    GR     GG G G    G  G G G  GG G      G      G GGG   G  
Sbjct: 129  GYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGGYGGSGYGGGGGYGGGGY 188

Query: 865  MG 860
             G
Sbjct: 189  GG 190


>UniRef50_UPI0000E46741 Cluster: PREDICTED: similar to DNA repair
            endonuclease subunit, partial; n=1; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to DNA repair
            endonuclease subunit, partial - Strongylocentrotus
            purpuratus
          Length = 260

 Score = 34.3 bits (75), Expect = 5.8
 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 1045 GXENXGREXXPXGGXGX-GXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGG 884
            G E  G    P GG    G    GR GRG G  GG G   +  G      G GGG
Sbjct: 203  GGEAEGTTNKPGGGGKFAGRGRFGRGGRGFGGSGGRGFGGSGRGRAAGGRGGGGG 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,839,048
Number of Sequences: 1657284
Number of extensions: 3807175
Number of successful extensions: 3786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3664
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 111000173739
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)