Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O07
(1128 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0177 - 14770777-14772045 34 0.24
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 31 1.7
02_04_0400 - 22608519-22608844,22609044-22609122 31 2.2
07_03_0559 + 19475893-19476783 30 2.9
07_03_0558 + 19461369-19462448 29 6.8
06_03_0790 - 24636805-24637770 29 8.9
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 29 8.9
>07_03_0177 - 14770777-14772045
Length = 422
Score = 33.9 bits (74), Expect = 0.24
Identities = 23/79 (29%), Positives = 26/79 (32%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMGXXAXXXPRXG 830
GG G G G G G G GG G G G GGG G +G G
Sbjct: 261 GGFGKGGGLGGGGGLGGGEDGGLGGGIGKGGGIGGGFGKGGGLGGGGGLGGGGGLGGGSG 320
Query: 829 VXEXXRXXGXXXHEWGKXG 773
+ G +GK G
Sbjct: 321 LGGGIGKGGGLGGSFGKGG 339
Score = 33.1 bits (72), Expect = 0.41
Identities = 30/116 (25%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Frame = -3
Query: 1117 GAPGRRXGGLCPQDXXGXXXRRXQGXENX-GREXXPXGGXGXGXXXVGRRGRGXGX*GGX 941
G G GG+ G + G G+ GG G G G G G G GG
Sbjct: 234 GGGGGLGGGIGKGGGLGGGIGKGGGLGGGFGKGGGLGGGGGLGGGEDGGLGGGIGKGGGI 293
Query: 940 GXXXAXIGXXXXXEGXGGGXXXGAXMGXXAXXXPRXGVXEXXRXXGXXXHEWGKXG 773
G G G GGG G G G+ G +GK G
Sbjct: 294 GGGFGKGGGLGGGGGLGGGGGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGGFGKGG 349
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
GG G G G G+G G GG G G G GGG G G
Sbjct: 323 GGIGKGGGLGGSFGKGGGLGGGFGKGGGIGGGFGKGGGLGGGGGLGGGGG 372
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
GG G G G G+G G G G G G GGG G +G
Sbjct: 313 GGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGGFGKGGGIGGGFGKGGGLG 362
Score = 30.3 bits (65), Expect = 2.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXG 872
GG G G G G+G G GG G G G GGG G
Sbjct: 231 GGLGGGGGLGGGIGKGGGLGGGIGKGGGLGGGFGKGGGLGGGGGLG 276
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = -3
Query: 1006 GXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
G G G G G+G G GG G G G GGG G G
Sbjct: 158 GGGIGPGIGGGYGKGGGLGGGIGKGGGLGGGFGKSGGLGGGGGLGGGGG 206
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
GG G G G G+G G GG G G G GGG G G
Sbjct: 343 GGFGKGGGIGGGFGKGGGL-GGGGGLGGGGGGGGGGFGGGGGSGIGGGFG 391
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 31.1 bits (67), Expect = 1.7
Identities = 28/86 (32%), Positives = 28/86 (32%)
Frame = -3
Query: 1117 GAPGRRXGGLCPQDXXGXXXRRXQGXENXGREXXPXGGXGXGXXXVGRRGRGXGX*GGXG 938
G G R GG G G G P GG G G G GRG G GG G
Sbjct: 15 GRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGG--GRGYGGGGGGG 72
Query: 937 XXXAXIGXXXXXEGXGGGXXXGAXMG 860
G G GGG G G
Sbjct: 73 ------GRGYGGGGGGGGYESGGGRG 92
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGG 884
GG G G G GRG G GG G G G GGG
Sbjct: 50 GGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGG 91
>07_03_0559 + 19475893-19476783
Length = 296
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
GG G G G +G G G GG G A G G GGG G G
Sbjct: 171 GGGGGGIGGGGGKGGGFGAGGGVGG--AAGGGGGMGSGGGGGFGGGGGKG 218
>07_03_0558 + 19461369-19462448
Length = 359
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAXMG 860
GG G G +G G G G GG G G G GGG G G
Sbjct: 64 GGLGGGGGGLGG-GHGGGFGGGGGLGGGASGGVGGGGGFGGGGGGGLGGG 112
>06_03_0790 - 24636805-24637770
Length = 321
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 1009 GGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXG 872
GG G G G GRG G GG G G G GGG G
Sbjct: 107 GGGGGGGGGGGGGGRGGGGGGGGGGGGG--GGGGGGGGGGGGGNGG 150
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -3
Query: 979 GRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXG 872
G RGRG G GG G G G GGG G
Sbjct: 665 GSRGRGRGRGGGGGRGRGGGGGGGRGGGGGGGGGRG 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,639
Number of Sequences: 37544
Number of extensions: 167669
Number of successful extensions: 273
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3409741232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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