Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O07
         (1128 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)                 35   0.14 
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  

>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
          Length = 258

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 21/62 (33%), Positives = 21/62 (33%)
 Frame = -3

Query: 1045 GXENXGREXXPXGGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXXXEGXGGGXXXGAX 866
            G    GR     GG G G    G  G G G  GG G      G      G GGG   G  
Sbjct: 160  GYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGGYGGSGYGGGGGYGGGGY 219

Query: 865  MG 860
             G
Sbjct: 220  GG 221


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = -3

Query: 1084 PQDXXGXXXRRXQGXENXGREXXPXGGXGXGXXXVGRRGRGXGX*GGXGXXXAXIGXXXX 905
            PQ       R   G  +        GG G G    GR GRG    GG        G    
Sbjct: 399  PQPGNKDRQRGQSGFGSLNSRRGGRGGPGGGYEGRGRGGRGGPRGGGPRGYDGGYGQGGG 458

Query: 904  XEGXGGG 884
             EG  GG
Sbjct: 459  YEGYSGG 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,623
Number of Sequences: 59808
Number of extensions: 104618
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3462358756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)