Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O06
(1028 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.037
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.80
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 4.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.7
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 9.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.9
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 9.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.037
Identities = 23/66 (34%), Positives = 24/66 (36%)
Frame = -3
Query: 804 GXGXXGXXRGGGGXXXXEGXGXGGWGGKXARXLHHQXXEXXXQXXGKAGXRXXXGGGIGG 625
G G G G GG G G GG+GG HH G G GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPG-GFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPGGFGGG 243
Query: 624 PXGXXG 607
P G G
Sbjct: 244 PGGFGG 249
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.80
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 951 PXFSXPXPPXPPXXTTPXXPXFPPLP 1028
P S P PP PP + P P PP+P
Sbjct: 1700 PQMSAPTPPPPPM-SVPPPPSAPPMP 1724
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 772 PXPPXSPXPLAQNLXHPPPPCXXXKXPPXPXTG 870
P PP +P A PPPP P P G
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 951 PXFSXPXPPXPPXXTTPXXPXFPPLP 1028
P + P PP PP P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 915 TRPLPSRXXNXRPXFSXPXPPXPPXXTTPXXPXFPPLP 1028
T +P+ RP S P PP TTP P LP
Sbjct: 403 TSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLP 440
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +1
Query: 778 PPXSPXPLAQNLXHPPPPCXXXKXPPXPXTGFSRXXGSPFSPLGXKPGLSPLA 936
PP S N PPP P P G + +P P+ P L P A
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP--PVPTPPSLPPSA 427
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +2
Query: 626 PPIPPPXXXRXPALPFXCXXXSXX*WWSXLAXLPPHPPXPXPSXXXXPPP 775
PP PPP ++P S PP PP PS PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAP---------PPPPPRSAPSTGRQPPP 378
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 725 PPHPPXPXPSXXXXPPPPLXXP 790
PP PP P + PPPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 921 PLPSRXXNXRPXFSXPXPPXPPXXTTPXXPXFPPLP 1028
P P P P PP PP P PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 310 LRPLHHGYVFE*SCSSQAL-KSFGAGNIRRMTASCDFVGFCQTR 182
+RPL G + + +AL + G+G I T SC V F QTR
Sbjct: 185 VRPL--GLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTR 226
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.9
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -3
Query: 918 GFXXQRGKR*PXXAGKPXXGXXGXFVXXTGGGRVPQVLGXGXXGXXRGG-GGXXXXEGXG 742
G RG R G+ G G GGGR G G G RGG GG G
Sbjct: 10 GRGGSRGGRGGFNGGR--GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Query: 741 XGG 733
GG
Sbjct: 68 KGG 70
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 957 FSXPXPPXPPXXTTPXXPXFPPLP 1028
F+ P P PP T P FP +P
Sbjct: 278 FTSPRLPSPPQSTRPSSTRFPSVP 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,377
Number of Sequences: 5004
Number of extensions: 57076
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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