Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O06
         (1028 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 64  CGVCA*RTLRQKITINRSYEDRIYRRRQACVC 159
           C VC  +TL  K+T+ R  E + ++   + VC
Sbjct: 374 CDVCG-KTLSTKLTLKRHKEQQHFQPLNSAVC 404


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 392 FVLRPRAGFLSL*ERVPRHRA*QILSP-PQTSPP 294
           F  RP   ++S+ E++PR R    L+P P+  PP
Sbjct: 127 FPPRPMGPWISIQEQIPRFRHIGPLTPFPRFIPP 160


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 392 FVLRPRAGFLSL*ERVPRHRA*QILSP-PQTSPP 294
           F  RP   ++S+ E++PR R    L+P P+  PP
Sbjct: 368 FPPRPMGPWISIQEQIPRFRHIGPLTPFPRFIPP 401


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 337 IGLDRYYHHLRPLHHG 290
           I LDRY H   PL +G
Sbjct: 119 ISLDRYIHIKDPLRYG 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,975
Number of Sequences: 438
Number of extensions: 6230
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34346676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)