Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O05
         (967 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   1.4  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.3  
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             29   5.6  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   7.5  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   7.5  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   9.9  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +3

Query: 231 TKMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGG 404
           T+ G G  FGT      GLFG AG N        G +TG  +G         ST +GG
Sbjct: 47  TQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGG 101


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPPS P    PPP    P      P P  P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414



 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 870 PPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PPPS P    PPP    P      P P  P
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPP 403



 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420



 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 386 PPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425



 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 831 SXHPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           S  PP        PPP  P    PPP    P      P P  P
Sbjct: 388 SPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410



 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 870 PPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PPP  P    PPP   +P      P P  P
Sbjct: 403 PPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP  A     PP + P    PPP   +P      P P  P
Sbjct: 67  PPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPP 106


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)
 Frame = +3

Query: 168  EEEYPIRGLFSXRHPRDVTWDTKMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQL-- 341
            + +  + GL   R      W T++    V  +   +   LF KA  N ++ +DD   L  
Sbjct: 1077 DSQAKLSGLDILRQMESAGWKTRLAAIGVTRSPVTSQQALFAKAAVNAQLQSDDGKALRV 1136

Query: 342  TGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASG--SGVWDLDK 515
            T +  G  V+     ST+  G L     + +    +N  + G+  +TAS   +G    D+
Sbjct: 1137 TMETDGDLVV-----STDCLGEL----LDRRFTCKVNGSMTGKLTLTASMQIAGAPKGDQ 1187

Query: 516  NT-HISA-GGMVSKEXGHRRPDVGLQAT 593
            NT H++  G  V K+    R + G+Q T
Sbjct: 1188 NTVHVTGDGAAVDKKTDQCRHNKGIQFT 1215


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 205 DTPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN 339
           +TP+ +     WEEG +S  +DRT  + +   +T+E  S+ T  N
Sbjct: 12  NTPLRAGNESFWEEGNTSFKFDRTREEFN-SSITSEESSIETHAN 55


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 807 NLXMXTXSSXHPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXP 950
           N    T     PP+       PPP       PPP    P   S  P P
Sbjct: 186 NSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 233


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 807 NLXMXTXSSXHPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXP 950
           N    T     PP+       PPP       PPP    P   S  P P
Sbjct: 98  NSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPP 145


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +3

Query: 837 HPPYXADXXXNPP-PSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           +PPY       PP P  P    PPP    P      P P  P
Sbjct: 153 NPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPP 194


>SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 309 CCNRLYRRVHRRSVPKCRR 253
           C NR YRR  RR   +CRR
Sbjct: 282 CLNRTYRRAFRRLFRRCRR 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,690,633
Number of Sequences: 59808
Number of extensions: 595097
Number of successful extensions: 1739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2848211039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)