Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O05
         (967 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    30   2.8  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 267 GQNDDGLFG--KAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAA 440
           GQN   + G  + GY       D G    Q  G  V G GG S +YG +     +  Q  
Sbjct: 69  GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127

Query: 441 IDINRQIGGRSGMTASGS 494
              N    G SG  ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 26/86 (30%), Positives = 30/86 (34%)
 Frame = +3

Query: 240 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWA 419
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG  D  
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221

Query: 420 NKNAQAAIDINRQIGGRSGMTASGSG 497
                         GG  GM   G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 327 HH*KSLCCNRLYRRVHRRSVPKCRRPSLLPFSCPT 223
           H    +CCN L RR  RRS P    P   P S  T
Sbjct: 281 HRFSQMCCNSLRRRPVRRSHPISPSPGTSPSSVVT 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,038
Number of Sequences: 27780
Number of extensions: 421493
Number of successful extensions: 1296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)