Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O05
         (967 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    30   2.6  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   4.6  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   4.6  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    29   4.6  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   6.1  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   6.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   8.1  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    28   8.1  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   8.1  

>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPPS P    PP    SP      P P  P
Sbjct: 62  PPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQLP 101


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP  A+    PPP  P    PPP        +  P P  P
Sbjct: 375 PPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPP 414


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +3

Query: 831 SXHPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           S  PP  +    +PPP  P    PPP   SP      P P  P
Sbjct: 574 SPPPPVASPPPPSPPP--PVHSPPPPPVFSPPPPVFSPPPPSP 614


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 870 PPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PPP+ P    PPP   S    S  P P  P
Sbjct: 68  PPPNQPPNTTPPPTPPSSPPPSITPPPSPP 97


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 321 NDDRGQLTG--QAYGTRVLGPGGDSTNYGGR 407
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 828 SSXHPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           S   PP        PPP  P    PPP    P      P P  P
Sbjct: 375 SPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPP 418



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PPY       PPPS P    PPP    P      P P  P
Sbjct: 406 PPYVYPSPPPPPPSPPPYVYPPP----PPPYVYPPPPSPP 441



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 837 HPPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           +PP        PPPS P    PPP    P      P    P
Sbjct: 425 YPPPPPPYVYPPPPSPPYVYPPPPPSPQPYMYPSPPCNDLP 465


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP        PPP  P    PPP    P      P P  P
Sbjct: 432 PPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPP 471



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXPXXP 959
           PP  +    +PPP  P    PPP    P        P  P
Sbjct: 477 PPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPP 516



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 840 PPYXADXXXNPPPSXPXXXXPPPXXXSPXXXSXXPXP 950
           PP       +PPPS      PPP   +P   S  P P
Sbjct: 672 PPPPEVHYHSPPPSPVHYSSPPPPPSAPCEESPPPAP 708


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 870 PPPSXPXXXXPPPXXXSPXXXSXXPXP 950
           PP S P    PPP   SP   S  P P
Sbjct: 148 PPESPPPESLPPPSPESPSPPSPEPPP 174


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 264 LGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLD 413
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,128
Number of Sequences: 28952
Number of extensions: 406454
Number of successful extensions: 1664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)