Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O04
(960 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 82 1e-16
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 80 4e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 75 1e-14
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 35 0.015
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.32
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.32
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.42
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.56
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 3.9
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 3.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 3.9
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.2
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 82.2 bits (194), Expect = 1e-16
Identities = 45/111 (40%), Positives = 61/111 (54%)
Frame = +2
Query: 134 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 313
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 314 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 466
NIGSG SD+DMGFGLFD
Sbjct: 61 NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 80.2 bits (189), Expect = 4e-16
Identities = 44/111 (39%), Positives = 60/111 (54%)
Frame = +2
Query: 134 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 313
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 314 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 466
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 74.9 bits (176), Expect = 1e-14
Identities = 41/111 (36%), Positives = 59/111 (53%)
Frame = +2
Query: 134 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 313
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 314 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 466
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 35.1 bits (77), Expect = 0.015
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -2
Query: 953 GGXXGGXXXRGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXGGGGPAXGG 801
GG G RGG GG R G RG GG G GG GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 34.3 bits (75), Expect = 0.026
Identities = 21/51 (41%), Positives = 22/51 (43%)
Frame = -2
Query: 953 GGXXGGXXXRGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXGGGGPAXGG 801
GG G RGG G GG R G RG GG G GG G + GG
Sbjct: 16 GGRGGFNGGRGGFG---GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 32.7 bits (71), Expect = 0.079
Identities = 24/65 (36%), Positives = 24/65 (36%)
Frame = -2
Query: 926 RGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXGGGGPAXGGXXXXGXXGXXXXGGXGGV 747
RGG G GG G RG GG G GG G A GG G G GG
Sbjct: 8 RGGRGGSRGGRGGFNGG-RGGFGGGRGGARG--GGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 746 GXKVG 732
G G
Sbjct: 65 GGAKG 69
Score = 31.9 bits (69), Expect = 0.14
Identities = 24/55 (43%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -2
Query: 953 GGXXGGXXXRGGG--GXXXXXXGGXR--RGXRGWXXGGXXXXXGXXGGGGPAXGG 801
GG GG GGG G GG R RG RG GG G GG G A GG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG---RGGSSGGRGGAKGG 70
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.045
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +1
Query: 778 PXXPXXXXPPXAGPPPPXXPXXXXXPPXXHPLXPLRXPPXXXXXXPPPPLXXXP 939
P P P + PPP P P P P PP PPPPL P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK-VPPPPLSQAP 210
Score = 26.6 bits (56), Expect = 5.2
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Frame = +1
Query: 787 PXXXXPPXAGPPPPXXPXXXXXPPXXHPLXPLRXPPXXXXXXP---PPPLXXXPPXXPP 954
P PP PPP P P P P PP P PP P PP
Sbjct: 139 PPTSAPPRPSIPPP-SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +1
Query: 805 PXAGPPPPXXPXXXXXPPXXHPLXPLRXPPXXXXXXP-PPPLXXXPPXXPP 954
P + P PP P PP P P PP P P P PP
Sbjct: 124 PPSAPAPPT-PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +1
Query: 778 PXXPXXXXPPXAGPPPPXXPXXXXXPPXXHPLXPLRXPPXXXXXXPPPPL 927
P P PP P P P PP P P P PPPPL
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP-----SAPPPPL 1735
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 823 PPXXPXXXXXPPXXHPLXPLRXPPXXXXXXPP--PPLXXXPPXXPP 954
PP P P P P PP PP PP+ PP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = -2
Query: 950 GXXGGXXXRGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXGGGGPAXGGXXXXGXXGXX 771
G G RGG G GG R G G G G GG GG G G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRG------GFGGGSRGGFGGGSRGGSRGGF 182
Query: 770 XXGGXGG 750
G GG
Sbjct: 183 RGGSRGG 189
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.42
Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Frame = -2
Query: 953 GGXXGGXXXRGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXG--GGGPA--XGGXXXXG 786
G GG GGG G G G+ GG G G GGGP GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGF--GGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
Query: 785 XXGXXXXGGXGGVGXKVG 732
GG GG G G
Sbjct: 242 GGPGGFGGGLGGFGGGPG 259
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 953 GGXXGGXXXRGGGGXXXXXXGGXRRGXRGWXXGGXXXXXGXXGGGGP 813
GG GG GG G GG G G+ G G G GGP
Sbjct: 227 GGGPGGF--EGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Frame = +1
Query: 778 PXXPXXXXPPXAGPPPPXXPXXXXXPPXXHPLXPLRXP-PXXXXXXPP-PPLXXXPPXXP 951
P P P PP P P P P+ P P PP PP PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 26.6 bits (56), Expect = 5.2
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Frame = +1
Query: 802 PPXAGPP--PPXXPXXXXXPPXXHPLXPLRXP--PXXXXXXP-PPPLXXXPPXXPP 954
PP PP PP P PP P P+ P P P PPL P PP
Sbjct: 415 PPVPTPPSLPPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 434 SDDDMGFGLFD 466
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 5.2
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 116 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 286
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 287 GINVRDLIT 313
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Frame = +1
Query: 820 PPPXXPXXXXXPPXXHPLXPLRXPPXXXXXXPPPP----LXXXPPXXPP 954
PPP P P P+ P PPPP PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,562
Number of Sequences: 5004
Number of extensions: 39151
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -