Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O03
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    30   0.44 
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    29   1.0  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   5.4  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   5.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   7.1  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 415  CSAGRVCEINEHGDAMCNCIKDCPYETD---SRPHGVHKLQRN 534
            C+A R+C++ E       C+ DC   T    S+  GV  LQ+N
Sbjct: 974  CTASRICKVREIASLSLTCLLDCSKMTTFIVSQLKGVAGLQQN 1016


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 621 TWWYCGP--RH*SELSRHKHRWRYTSQSD 541
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 427 RVCEINEHGDAMCNCIKDCPYETDSRPHGVHKLQRNLA 540
           + C  NE+G   C C    P+E+ +    V+KL +  +
Sbjct: 27  KTCVSNENGCINCRCSPSEPHESANVDESVNKLSKTFS 64


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 443 TNTETPCVTASRTVPTRQTPDRMVCTNFNETWQSDCEVYR 562
           TNT TP          +   DR    NF  +W  DCE+ R
Sbjct: 190 TNTTTPFTFIEHNALWKGE-DRYADWNFTNSWDPDCELPR 228


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -1

Query: 447 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 268
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 267 VFSLRDVPAAELLRRWTFSS 208
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 321 FCLMVSLLVQALRHSVLDVFSLRD 250
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,346
Number of Sequences: 5004
Number of extensions: 54497
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)