Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O03
         (990 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co...    29   4.8  
At2g28860.1 68415.m03508 cytochrome P450 family protein similar ...    29   4.8  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    29   6.3  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    29   6.3  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    29   6.3  

>At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 458 PCVTASRTVPTRQTPDRMVCTNFNETWQSDCEVYRQRCLCLD 583
           P ++ S  V        M    FNET++S CE  +  C+ LD
Sbjct: 504 PAISTSEAVEMSPEEAMMQFKKFNETFESTCEA-QSECIVLD 544


>At2g28860.1 68415.m03508 cytochrome P450 family protein similar to
           Cytochrome P450 61 (C-22 sterol desaturase) (SP:P54781)
           {Saccharomyces cerevisiae}
          Length = 493

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 500 PDRMVCTNFNETWQSDCEVYRQRCLCLDN-SDQCRGPQY 613
           PDR     F+ET Q D EV+++  L   N S QC G +Y
Sbjct: 403 PDRFDPDRFSETRQED-EVFKRNFLTFGNGSHQCVGQRY 440


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 501 QTAWCAQTSTKPGNRIAKYTASDAYASTTL 590
           Q  W  QT  KP + I  YT  D Y S+ L
Sbjct: 13  QPPWIPQTPMKPFSPICPYTVEDQYHSSQL 42


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 767 GXPXWHDPQXFXTPNLAXPXPXXXXXWGPXGP 862
           G P W+  Q F  P+   P P     WGP  P
Sbjct: 44  GPPAWYSNQ-FHHPHSPSPPPPPPPQWGPPSP 74


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 767 GXPXWHDPQXFXTPNLAXPXPXXXXXWGPXGP 862
           G P W+  Q F  P+   P P     WGP  P
Sbjct: 44  GPPAWYSNQ-FHHPHSPSPPPPPPPQWGPPSP 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,071
Number of Sequences: 28952
Number of extensions: 329674
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2411911104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)