Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O02
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.078
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.10
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.55
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.3
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 5.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.1
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 6.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 9.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 9.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 9.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 791 PPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPPXKXXPP 913
PP Q+ P + + +P PP PPPP PP PP
Sbjct: 1690 PPVRPQSAA--PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 791 PPPAXQTXPXHPLKXAXXSPAXPPXXXPPP 880
PPP + P P A PA PP PPP
Sbjct: 1707 PPPPPMSVPPPP--SAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +2
Query: 791 PPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPPXKXXPPXXKGXXXXP 940
P T P P A + P PPP PP PP G P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP-PPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +2
Query: 773 RQHTXFPPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPP 895
R + PP P P P+ PP PP PP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.10
Identities = 30/114 (26%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Frame = +2
Query: 626 IGRSSASSLTDSLPR----SSXXGXPXPXPPAXIPXSXXXXXXXXXXXXXXXXRQHTXFP 793
IG+SSAS+ S P S P PP P + P
Sbjct: 115 IGKSSASAAPPSAPAPPTPQSELRPPTSAPPR--PSIPPPSPASAPPIPSKAPPIPSSLP 172
Query: 794 PPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPPXKXXPPXXKGXXXXPXXFXP 955
PPA P P+K +P+ P P PP PP P F P
Sbjct: 173 PPAQ---PAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.55
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 836 AXXSPAXPPXXXPPPPXXPPXKXXPPXXKG 925
A P PP PPP PP + PP G
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 861 PXXPPPPPXXPPXXXXPPXXKXG 929
P PPPPP P PP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 861 PXXPPPPPXXPPXXXXPPXXKXGXPXXG 944
P PPPPP PP PP P G
Sbjct: 6 PGNPPPPP--PPPGFEPPSQPPPPPPPG 31
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 794 PPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPPXKXXPP 913
PP P PL +P P PP PP PP
Sbjct: 494 PPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPP 533
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 161 QLKSRERFY*KCLMFEDDKYFNRFTVRLPCTSVRQNKQILREFPXS 24
+L + E Y CL+ ++ F +T+ +P +SVR N Q ++P S
Sbjct: 10 ELLALESIYPSCLLPISEQSFT-YTLSIPDSSVRLNIQFPLDYPNS 54
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 815 PXHPLKXAXXSPAXPPXXXPPPPXXPP 895
P + K A PA PP PPPP PP
Sbjct: 225 PTYTPKQADPLPAPPP---PPPPTLPP 248
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 791 PPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPP 895
PPP+ Q P A + + P PPPP PP
Sbjct: 167 PPPSFQ-----PPSAAAPATSLPSDYNPPPPPPPP 196
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 791 PPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPP 895
PPPA P PA P PPPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPA-PIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 791 PPPAX-QTXPXHPLKXAXXSPAXPPXXXPPPP 883
PPPA P P + A PP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.0 bits (47), Expect(2) = 5.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 870 PPPPPXXPP 896
PPPPP PP
Sbjct: 306 PPPPPPPPP 314
Score = 21.8 bits (44), Expect(2) = 5.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 858 LPXXPPPPP 884
LP PPPPP
Sbjct: 305 LPPPPPPPP 313
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 912 GGXXXXGGXQGGGGX*XGGXAGEXXAXFRGXXGXVWXAGGGK 787
GG G +GG G GG G RG G A GG+
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR 57
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 773 RQHTXFPPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPPXKXXPP 913
R+ + PPP P + A + A PP PPP + PP
Sbjct: 3 RRRSAAPPPRRAA----PARSASTAAALPPRTMAPPPAPSRVQQAPP 45
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +2
Query: 779 HTXFPPPAXQTXPXHPLKXAXXSPAXPPXXXPPPPXXPP 895
H FP A + HP++ + +P P PP P
Sbjct: 266 HNSFPASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIP 304
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 518 TCLLQLIMXTNKAIASXISQIKHFFH 441
+CL+ L TN I + KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 858 LPXXPPPPPXXPP 896
+P PPPPP PP
Sbjct: 941 MPAFPPPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,947
Number of Sequences: 5004
Number of extensions: 35483
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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