Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N24
         (1028 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.54 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   6.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +2

Query: 800 TAPSHSXPPPXXPPPPPXXLPXCPXSXTHPP-PPXPPXPXPP 922
           T P +  P P    P P   P       +PP P  PP P PP
Sbjct: 147 TMPKYE-PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 978  PPTLXXXPXPPPPLXPP 1028
            PP     P P PP+ PP
Sbjct: 175  PPLPQVPPLPLPPIFPP 191


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 800 TAPSHSXPPPXXPPPPPXXLPXCPXSXTHPPPPXPPXPXPP 922
           T P +   P    P P         +   P P  PP P PP
Sbjct: 147 TMPKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 840 PXPPPXSPXAPXPXP 884
           P P P  P AP P P
Sbjct: 80  PEPDPEIPVAPEPAP 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,722
Number of Sequences: 336
Number of extensions: 2820
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29279548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)