Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N24
         (1028 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.27 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 836 PPPPPXXLPXCPXSXTHPPPPXPPXPXPPXPXXPP 940
           P P P   P  P   + P P   P P  P P  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPP 56



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +2

Query: 806 PSHSXPPPXXPPPPPXXLPX--CPXSXTHPPPPXPPXPXPP 922
           PS   P P   P      P    P + +  PPP  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 803 APSHSXPPPXXPPPPPXXLPXCPXS 877
           AP    PP     PPP   P  P S
Sbjct: 33  APQRGSPPNPSQGPPPGGPPGAPPS 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 809 SHSXPPPXXPPPPP 850
           S + P P  PPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 887 PPPPXPPXPXP 919
           PP P PP P P
Sbjct: 338 PPKPAPPPPPP 348


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 148 FICPMMSI-HIKDSEDLKTGWRKP 216
           F C +  I  +KDS +   GW+ P
Sbjct: 135 FFCEVRPIKRVKDSTNCNCGWKNP 158


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +2

Query: 827 PXXPPPPPXXLPXCPXSXTHPPPPXPPXPXPP 922
           P  PP PP        +  HP       P PP
Sbjct: 104 PTAPPIPPEIQRALEWNAAHPEEDDGGQPRPP 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 800  TAPSHSXPPPXXPPPPP 850
            TA     PPP  PPPPP
Sbjct: 1348 TAWRQQQPPP--PPPPP 1362


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 846 PPPXSPXAPXPXPTP 890
           PP  +P +P P P P
Sbjct: 437 PPSSNPVSPVPSPDP 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,538
Number of Sequences: 438
Number of extensions: 6734
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34346676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)