Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N23
         (951 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.37 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    26   0.49 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   2.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   2.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   8.0  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 816 PXPXPPXTXXXXXPXPPXPXXPPPXPPPPXXP 911
           P P  P T       PP P   PP P PP  P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQV-PPLPLPPIFP 190



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 882 PPXPPPPXXPXPXPPXPPP 938
           PP P  P  P P PP  PP
Sbjct: 175 PPLPQVP--PLPLPPIFPP 191


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 286 EPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*T 119
           +P  VI + T  PS  L+NR G+      A+         P T+T++ T +  + T
Sbjct: 123 KPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFT 178


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 863 PXPXXPXXPPXPPPXPPXXPPPXPXPPP 946
           P P      P P P  P  P P P   P
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASP 98


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 84  KLKMVSKAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAK 239
           ++KM  K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK
Sbjct: 305 EMKM-DKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAK 363

Query: 240 AL 245
            L
Sbjct: 364 LL 365


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 898 GGGXGGGXXGXGGXG 854
           GGG GGG  G  G G
Sbjct: 92  GGGRGGGRDGDRGDG 106



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 911 GGXGGGXXGXXXXGGG 864
           GG GGG  G    GGG
Sbjct: 93  GGRGGGRDGDRGDGGG 108



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 944 GGGXGXGGGXXGGXGGG 894
           GGG G G     G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 641 FXPPPXXTAXXXLPYPSNFV 700
           + PP        LPYP N++
Sbjct: 24  YLPPSLSDTRPMLPYPQNYI 43


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 531 PPXXPXPPXXXPSTXGRGSPL 593
           PP  P PP    S  G  +PL
Sbjct: 176 PPPQPEPPVTFNSLNGAHTPL 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,277
Number of Sequences: 336
Number of extensions: 5517
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26789147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)