Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N21
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 262 RQSGPGDRGPR-FG*SHR 312
           R  GPG +GPR F  SHR
Sbjct: 56  RNPGPGSKGPRDFPRSHR 73


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 56   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 148
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 56   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 148
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,783
Number of Sequences: 438
Number of extensions: 7398
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)