Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N20
         (1557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   3.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 541 PPXXXPPXPPPQXQXP 588
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 145 PXXPPPXXHXLKPIPNPXXREXTIP 219
           P   PP  + + P+P+P   +  IP
Sbjct: 433 PILTPPSSNPVSPVPSPDPLDLAIP 457


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +2

Query: 752 HPKPNQTHPXPXTPKTXQPQNXXXPTXXHXTLPNXHXT 865
           HP P +    P T  T         T  H   P+ H T
Sbjct: 284 HPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHST 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.129    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,553
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54668625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)