Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N19
         (1209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.98 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 19/72 (26%), Positives = 23/72 (31%)
 Frame = +3

Query: 906  PKXLPXDXTXXXRXXPKXXSXPXSXXXLSPXXPLXXXVXXXRXXXXPARLXPXXXPAAPX 1085
            P   P   T      P   + P     + P  P        +    P+ L P   PAAP 
Sbjct: 124  PPSAPAPPTPQSELRPPTSAPPRPS--IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181

Query: 1086 XXPXDXPXXPSA 1121
              P   P  PSA
Sbjct: 182  KSPPSAPSLPSA 193


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 20/74 (27%), Positives = 23/74 (31%)
 Frame = +1

Query: 856  PTXSAXPXXXXPSXPSXPRXSLPTXXXAXXPXPSXHPXXSAXXXSLPXXXXXXRCXXXAX 1035
            PT  + P    PS P     SLP    A  P P   P        +P           A 
Sbjct: 418  PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP---LPPAAP 474

Query: 1036 XPXPPXXRRPAXPL 1077
             P P     PA P+
Sbjct: 475  APPPAPAPAPAAPV 488


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 806  PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
            P P P  G   +  P + P  P P       PPP   P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,719
Number of Sequences: 5004
Number of extensions: 11138
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)