Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N19
         (1209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    30   3.8  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    29   8.7  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    29   8.7  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    29   8.7  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    29   8.7  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PPP P      L +    P PP P    H   PP   P
Sbjct: 471 PPPGPPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPP 508



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPP 907
           PPP P  G   L      P PP P    +  PPP
Sbjct: 520 PPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPP 553


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PP  P +    +    D P PP P     L PPP+  P
Sbjct: 128 PPTAPIIHNKMIIRE-DIPAPPRPPPPVELSPPPRPPP 164


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PP  P +    +    D P PP P     L PPP+  P
Sbjct: 769 PPTAPIIHNKMIIRE-DIPAPPRPPPPVELSPPPRPPP 805


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PP  P +    +    D P PP P     L PPP+  P
Sbjct: 769 PPTAPIIHNKMIIRE-DIPAPPRPPPPVELSPPPRPPP 805


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PP  P +    +    D P PP P     L PPP+  P
Sbjct: 769 PPTAPIIHNKMIIRE-DIPAPPRPPPPVELSPPPRPPP 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,711
Number of Sequences: 27780
Number of extensions: 85106
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)