Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N19
         (1209 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.1  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    31   1.5  
At1g61080.1 68414.m06877 proline-rich family protein                   30   2.6  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    30   3.5  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   4.6  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    29   4.6  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   4.6  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PPP P      +  P   P PP P    +  PPP   P
Sbjct: 452 PPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPP 489


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 809 PPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PP P L       P   P PP P     L PPP++ P
Sbjct: 64  PPEPPLPPRFELPPPLFPPPPLPRLPPPLLPPPEEPP 100



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPP 907
           PPP P L    L  P + P  P P       PPP
Sbjct: 82  PPPLPRLPPPLLPPPEEPPREPPPPPPPPEEPPP 115


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXH---PXDXPXPPXPXXXXHLXPPPQDXP 919
           PPP P      L H   P   P PP      H  PPP   P
Sbjct: 458 PPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPP 498



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXP---XXXXHLXPPP 907
           PPP P +    +  P   P PP P       H  PPP
Sbjct: 440 PPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFAPPP 476


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPPQDXP 919
           PPP P        HP      P P    H  PPP   P
Sbjct: 737 PPPTPIHSPPPQSHPPCIEYSPPPPPTVHYNPPPPPSP 774


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 806 PPPXPXLGXXXLXHPXDXPXPPXPXXXXHLXPPP 907
           PPP P        +P   P PP P    +  PPP
Sbjct: 397 PPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPP 430


>At3g10070.1 68416.m01207 transcription initiation factor IID (TFIID)
            subunit A family protein similar to hypothetical protein
            GB:CAB10099 [Schizosaccharomyces pombe]; contains Pfam
            profile PF03847: Transcription initiation factor TFIID
            subunit A
          Length = 539

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 889  PSXPSXPRXSLPTXXXAXXPXPSXHPXXSAXXXSLPXXXXXXRCXXXAXXPXPPXXRRP 1065
            P  P  P  S P+      P PS +P  S+   S+P      +       P PP   RP
Sbjct: 14   PETPPQPSDSKPSTLTQIQPTPSTNPSPSSVVSSIP-SSPAPQSPSLNPNPNPPQYTRP 71


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +1

Query: 805 PPPXSRTRXXXSRXSXXPTXSAXPXXXXPSXPSXPRXSLPTXXXAXXPXPS 957
           PPP    R   S  S  P+ S  P    PS PS P  +LP    +  P PS
Sbjct: 231 PPPPGSKRPTPSPPS--PSDSKRPVH--PSPPSPPEETLPPPKPSPDPLPS 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,327,640
Number of Sequences: 28952
Number of extensions: 90766
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3083946536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)