Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N18
         (1005 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.40 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   8.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   8.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   8.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 897 PXXXXPGPGXXPXXXGXXXXPXPPXPXXPPPPXP 998
           P    PGP   P   G      PP P  PP P P
Sbjct: 155 PSIIDPGPALPPT--GFLCNNYPPLPQVPPLPLP 186


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 361 QAYGT--RVLGPGGDSTSYGGRLDW 429
           + +GT  RV  P    T YGGRL W
Sbjct: 75  KVHGTTVRVRPPKVYPTPYGGRLVW 99


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 361 QAYGT--RVLGPGGDSTSYGGRLDW 429
           + +GT  RV  P    T YGGRL W
Sbjct: 389 KVHGTTVRVRPPKVYPTPYGGRLVW 413


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 361 QAYGT--RVLGPGGDSTSYGGRLDW 429
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 361 QAYGT--RVLGPGGDSTSYGGRLDW 429
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,881
Number of Sequences: 336
Number of extensions: 3815
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28650941
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)