Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N18
         (1005 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    24   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.6  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 DRGKLTGQAYGTRVLGPGGDSTSYGG 417
           D+  +TG AYG   + PG  S  + G
Sbjct: 66  DKNGMTGDAYGGLNIRPGQPSRQHAG 91


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 445 WRSHWPSLDDHRNWY 401
           W +H P+ D   NWY
Sbjct: 661 WLNHSPNYDQVTNWY 675


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 963 PPXPXXPPPP 992
           PP P  PPPP
Sbjct: 338 PPKPAPPPPP 347


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 193 KVSPTPSRYSRLCHLGQGNGGREGLRDFGRERPRXFLVK 309
           + S   SRY  L H  + +   +G R   R+R R +  K
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKK 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,445
Number of Sequences: 438
Number of extensions: 6665
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)