Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N16
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    91   2e-19
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    91   2e-19
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    28   2.2  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALK 407
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SG + RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 408 LVEKVQDGGRILTTQGRRDLEQ 473
           ++EK  +GGR ++ QG+RDL++
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDR 133



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +1

Query: 73  MRSVTVKDVEQDXIVKTVAAHLKKTGKVKVPEXMDLVKTARFKELAPX*P 222
           M  V+VKDV+    +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALK 407
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SG + RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 408 LVEKVQDGGRILTTQGRRDLEQ 473
           ++EK  +GGR ++ QG+RDL++
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDR 133



 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +1

Query: 73  MRSVTVKDVEQDXIVKTVAAHLKKTGKVKVPEXMDLVKTARFKELAPX*P 222
           M  V+VKDV+    +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 67  LVLATGRKPKILRIPYSE 14
           L+ +TGR+PKIL  PY E
Sbjct: 207 LIFSTGRQPKILGKPYDE 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,969
Number of Sequences: 5004
Number of extensions: 38701
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)