Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N16
         (929 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          61   1e-09
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                29   4.1  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 28/56 (50%), Positives = 37/56 (66%)
 Frame = +3

Query: 306 IFGGRKRNGVTPSHFCRSSGXIARKALQSLEALKLVEKVQDGGRILTTQGRRDLEQ 473
           I  GRK  G  PSHF   S  +AR  L+ LE +KLVEK   GGR +T+QG+RD+++
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDR 87



 Score = 37.9 bits (84), Expect = 0.012
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 145 TGKVKVPEXMDLVKTARFKELAPX*P 222
           +G +K+P+ +DLVKT +FKELAP  P
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDP 27


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 LCALCCHPSSYLHSLTCWSKDCHQ 304
           LC+  C   S+ H+LTC ++ CHQ
Sbjct: 99  LCSQSCVWESHCHALTCTARICHQ 122


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +2

Query: 236 CALCCHPSSYLHSLTCWSKDCHQDLWWAQT*WSYXFTFLQVIRXYCTQGF 385
           C +CC     L  L C  + CH    W    W +     +    +C +GF
Sbjct: 184 CIICCEGDDELELLPCCKQPCHYPCLWK---WVHAHLTPRSTCPHCRKGF 230


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 231 FYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALKL 410
           +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ ++L
Sbjct: 59  WYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRMQL 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,448,453
Number of Sequences: 59808
Number of extensions: 332181
Number of successful extensions: 1115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)