Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N16
         (929 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...    97   2e-20
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...    96   3e-20
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...    93   2e-19
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   4.4  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 42/82 (51%), Positives = 57/82 (69%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALK 407
           W+Y+R A++ R IY+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + 
Sbjct: 53  WYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMS 112

Query: 408 LVEKVQDGGRILTTQGRRDLEQ 473
           +VE    GGR +T+ G+RDL+Q
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQ 134



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +1

Query: 85  TVKDVEQDXIVKTVAAHLKKTGKVKVPEXMDLVKTARFKELAPX*P 222
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAP  P
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDP 51


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 41/82 (50%), Positives = 57/82 (69%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALK 407
           W+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + 
Sbjct: 53  WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMN 112

Query: 408 LVEKVQDGGRILTTQGRRDLEQ 473
           +VE    GGR +T+ G+RDL+Q
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQ 134



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +1

Query: 85  TVKDVEQDXIVKTVAAHLKKTGKVKVPEXMDLVKTARFKELAPX*P 222
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAP  P
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDP 51


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 38/82 (46%), Positives = 57/82 (69%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGXIARKALQSLEALK 407
           W+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+SSG +AR  LQ L+ + 
Sbjct: 53  WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMN 112

Query: 408 LVEKVQDGGRILTTQGRRDLEQ 473
           +V+    GGR +T+ G+RDL+Q
Sbjct: 113 IVDLDTKGGRKITSSGQRDLDQ 134



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +1

Query: 85  TVKDVEQDXIVKTVAAHLKKTGKVKVPEXMDLVKTARFKELAPX*P 222
           TVKDV     VK  AAHLK++GK+++P   D+VKT + KELAP  P
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDP 51


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 348 FCRSSGXIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLEQ 473
           FCRSSG  A    + + ++ + + K +DG ++L    RR L+Q
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQ 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,038
Number of Sequences: 28952
Number of extensions: 246382
Number of successful extensions: 1254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)