Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N15
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    31   1.1  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    31   1.1  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        31   1.5  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    31   1.5  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   6.1  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    28   8.1  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     28   8.1  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    28   8.1  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
 Frame = +3

Query: 75  KSVVNSGWAV*PSRSADAVPKP--STIKTKNVDAVFVE--KQKKILSFFQDVSQLNTDDE 242
           K  V + WA    +  D  P+P     +T+     +V+  K KK+ S F +    +T D 
Sbjct: 12  KRGVFTEWAE-AKKQIDKFPQPVYKKFETEEEAQKYVDDRKPKKVESTFPE----STHDT 66

Query: 243 YYKIGKDYDIEMNMDNYTNKKAVEXFLKMYRTGFMPKNLEXSVFYDKMRDEAIALFHLFY 422
           YY + + + + +    +TN   V+  +K Y     P + + S       +EAIA FH +Y
Sbjct: 67  YYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHKYY 114

Query: 423 YAKD 434
             K+
Sbjct: 115 EGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
 Frame = +3

Query: 75  KSVVNSGWAV*PSRSADAVPKP--STIKTKNVDAVFVE--KQKKILSFFQDVSQLNTDDE 242
           K  V + WA    +  D  P+P     +T+     +V+  K KK+ S F +    +T D 
Sbjct: 12  KRGVFTEWAE-AKKQIDKFPQPVYKKFETEEEAQKYVDDRKPKKVESTFPE----STHDT 66

Query: 243 YYKIGKDYDIEMNMDNYTNKKAVEXFLKMYRTGFMPKNLEXSVFYDKMRDEAIALFHLFY 422
           YY + + + + +    +TN   V+  +K Y     P + + S       +EAIA FH +Y
Sbjct: 67  YYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHKYY 114

Query: 423 YAKD 434
             K+
Sbjct: 115 EGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 351 KNLEXSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 485
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 351 KNLEXSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 485
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 644  IKEAXGHXC*VDFLQHXHIHKHFRVYFIRSRNNETVAIRALDNSDV 507
            + +  GH   +++L H H  KHF V+       +TV++R  D  ++
Sbjct: 1923 VSDDAGHVAFMEYLFHPHSRKHFPVFV---EKLDTVSVREHDEQEL 1965


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 614 VDFLQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 492
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 614 VDFLQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 492
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 614 VDFLQHXHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 492
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,533
Number of Sequences: 27780
Number of extensions: 315678
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)