Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N15
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.26 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.26 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    30   1.9  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   7.5  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    28   9.9  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 584 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 426
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 584 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 426
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 KAVEXFLKMYRTGFMPKNLEXSVFYD 380
           KA+E F +MY+TG MP  +  S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 72  MKSVVNSGWAV*PSRSADAVPKPSTIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYK 251
           ++S  +S  +V   R+ +      +IK K   A+ +EK++K L    D S      E+ K
Sbjct: 42  IESYFDSTRSVLEERAKELEALEESIKVK---ALELEKKEKELCLI-DESMKAKQSEFEK 97

Query: 252 IGKDYDIEMNMDNYTNKKAVEXFLK 326
             KD+D+E   +    K+ VE   K
Sbjct: 98  KEKDFDLEQKAEVEKRKREVEQLEK 122


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 610 IFCSTXIFINILGYTSYGAGTTKPW 536
           ++CS     + LGYT  GA T  PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,862
Number of Sequences: 28952
Number of extensions: 282862
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)