Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N14
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.36 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.47 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 509 PPXXPPXXXXPPPPXXXPPXAXPXXXPP 592
           PP  PP    PPPP   PP   P   PP
Sbjct: 5   PPGNPPPP--PPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 509  PPXXPPXXXXPPPPXXXPPXAXPXXXPP 592
            P   PP    PPPP   P  A P   PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +2

Query: 485  PKKRGXXXPPXXPPXXXXPPPPXXXPPXAXPXXXPPXXGXXPLXEXPP 628
            P  R     P        PPPP   PP   P   PP     P    PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPP---PPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = -1

Query: 647 GGPXXIRGGTLR-GXGPXXXGGXXKGGXXGXXXGGGGVXXXXGG 519
           GGP    GG    G GP   GG   GG  G   G GG     GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGL-GGFGGGPGGFGGGPGGHGG 270



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -3

Query: 645 GPXXY*GGXSXRGXXPQXGGXXXGXAXGGXXXGGGGXXKXGG 520
           GP  + GG    G  P   G   G   GG    GGG    GG
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 647 GGPXXIRGGTLRGXGPXXXGGXXKGGXXGXXXGGGGVXXXXGG 519
           GG    RGG   G G    GG  +GG  G   G GG     GG
Sbjct: 19  GGFNGGRGGFGGGRGGARGGG--RGGARGGRGGRGGARGGRGG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,798
Number of Sequences: 5004
Number of extensions: 28065
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)