Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_N13
(847 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 59 4e-09
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 41 0.001
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 33 0.39
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 32 0.67
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 31 1.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 31 1.6
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 30 2.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 29 4.7
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 29 4.7
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 6.3
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 29 6.3
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 29 6.3
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 28 8.3
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 8.3
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 28 8.3
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/49 (55%), Positives = 38/49 (77%)
Frame = +2
Query: 266 HDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVI 412
+D L+VRSAT+V+++V+ AG LK++GRAG GVDNID +A GV V+
Sbjct: 77 YDGLIVRSATKVSEDVIKAGKNLKIIGRAGTGVDNIDTVAASLHGVLVM 125
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +2
Query: 299 VTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIXAPG 424
+T+E++ + LKV+ GAG+DNID+++A ++G+ V PG
Sbjct: 62 ITEELMASLPNLKVISNIGAGIDNIDLEAAKRRGILVGNTPG 103
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 299 VTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIXAPGANALSACELTCTLMLVLG 478
V+ +LD LKV+ GAG D ID+ +A K+G+ V PG + C + L+L
Sbjct: 58 VSNSLLDDLPSLKVISSIGAGFDRIDIPAATKRGIRVGNTPG--VVQDCTADMAIGLLLA 115
Query: 479 SPR 487
S R
Sbjct: 116 SAR 118
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 299 VTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIXAPGANALSACELTCTLMLVLG 478
V ++D +L+V+ AG GVD+ID+ +A +G+ V PG + C + L+L
Sbjct: 59 VDSALMDCYPELRVISSAGVGVDHIDLAAATIRGIRVGNTPG--VVQECTADHAIGLLLA 116
Query: 479 SPR 487
S R
Sbjct: 117 SAR 119
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -2
Query: 477 PRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPARPTTFSFTPASNT 310
P T+ + S ++ AP TPTP P+ + +TP PA PT + TP + T
Sbjct: 31 PTTHTPTKPSPTTPTSTAP-TQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPT 85
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 408 TPTPFLPAESTSMLSTPAPARPTTFSFTPASNT 310
TP+P P ++T +TP P PT + TP ++T
Sbjct: 58 TPSPTAPTQTTPTPATPTPTTPTPKTPTPTTST 90
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 408 TPTPFLPAESTSMLSTPAPA-RPTTFSFTPASNT 310
TPTP P +TS L+ P PA PT TP ++T
Sbjct: 78 TPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHT 111
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 408 TPTPFLPAESTSMLSTPAPARPTTFSFTPAS 316
TPTP P +T TP P T TPA+
Sbjct: 68 TPTPATPTPTTPTPKTPTPTTSTLTKPTPAT 98
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 570 TLPILGLGRVXRXVAXXMYAFGMNIIG 650
TL I+GLGR+ R VA M ++G+ IG
Sbjct: 10 TLAIIGLGRIGREVALRMQSYGVKTIG 36
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -2
Query: 513 SGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPARPT 340
SG G + G P T +H + P TP F+P + + P P R T
Sbjct: 82 SGRRGPSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPPPPGVFTPPPPYRTT 139
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 31.5 bits (68), Expect = 0.89
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Frame = -2
Query: 564 PAXXAASVQSPXPTCQPSG---ASGSWDPRGEPRTN--INVQVSSHALSALAPGAXITPT 400
P+ +S SP P+ PS + S +P EP N N +S+ +S P + +P
Sbjct: 491 PSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPSPNPISNPSISTSPISNPHPSSNPSPH 550
Query: 399 PFL---------PAESTSMLSTPAPARPTTFSFTPASNTS 307
P P+ + S +P P+ + SF+P+S++S
Sbjct: 551 PSSNPSSEPSPNPSSNPSSDPSPNPSSDPSLSFSPSSSSS 590
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 480 EPRTNINVQVSSHALSALAPGAXITPTPFLPAEST-SMLSTPAPARPTTFSFTPASNTSL 304
EP+T + + + + +AP + P +P E+T + ST AP T A T++
Sbjct: 4857 EPKTTVAPETTEAPGTTVAPETTMAPETTVPQETTIAPESTEAPETTMAPESTEAPETTM 4916
Query: 303 V--T*VAERTTRA 271
V T VA TT A
Sbjct: 4917 VPETTVAPETTMA 4929
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 459 VQVSSHALSAL-APGAXITPTPFLPAES--TSMLSTPAPARPTTFSFTPASNT 310
VQ +++ +S + AP A + PT PA++ T STPA + T TPA T
Sbjct: 703 VQSATNVVSVMSAPPAYVPPTSAPPAQTQVTDTYSTPAQTQVTDTYSTPAQTT 755
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = -2
Query: 477 PRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT 298
P+T + +S + APG P + AE+TS+ T A T P SN T
Sbjct: 2743 PKTTAAPETTSVPKTTAAPGTSTVPKTTVAAETTSVPKTTAIMETTA---VPMSNAGPET 2799
Query: 297 *VAERTTRA 271
A TT A
Sbjct: 2800 TAAPETTAA 2808
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/92 (22%), Positives = 37/92 (40%)
Frame = -2
Query: 546 SVQSPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSML 367
+ +P T P + + P T + + ++ A + +AP P L ++T
Sbjct: 211 TTMAPETTMAPETTVAA-ESTDAPDTTVAAETTASAETTVAPETTAAPDTTLVPDTTVAA 269
Query: 366 STPAPARPTTFSFTPASNTSLVT*VAERTTRA 271
T A A T + PA+ + T + TT A
Sbjct: 270 ETTAAAETTETTAVPATTDAPATNLPPETTAA 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = -2
Query: 534 PXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAEST----SML 367
P T P G + + + P T ++ + + + +AP P LP +ST S L
Sbjct: 29 PETTLSP-GTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAPKSTL 87
Query: 366 STPAPARPTTFSFTPASNTSLVT*VAERTTRA 271
+ A P T + P + + T VA TT A
Sbjct: 88 APETTAAPDT-TLAPETTVAPDTTVAPETTAA 118
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/92 (22%), Positives = 37/92 (40%)
Frame = -2
Query: 546 SVQSPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSML 367
+ +P T P + + P T + + ++ A + +AP P L ++T
Sbjct: 2024 TTMAPETTVAPETTVAA-ESTDAPDTTVAAETTASAETTVAPETTAAPDTTLVPDTTVAA 2082
Query: 366 STPAPARPTTFSFTPASNTSLVT*VAERTTRA 271
T A A T + PA+ + T + TT A
Sbjct: 2083 ETTAAAETTETTAVPATTDAPATNLPPETTAA 2114
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = -2
Query: 552 AASVQSPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTS 373
A + +P + P + + G P T + + +S + +AP P + E+T
Sbjct: 822 AETTAAPETSVAPETTAAP-ETSGAPETTMLPETTSAPATTMAPEPTAAPETTVAPETTD 880
Query: 372 MLSTPAPARPTTFSFTPASNTSLVT*VAERTTRA 271
+T A AR TT + P + + T +A TT A
Sbjct: 881 APATTA-ARETTAA--PETTMASETTMASETTMA 911
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -2
Query: 477 PRTNINVQVSSHALSALAPGAXITPTPFLPAEST----SMLSTPAPARPTTFSFTPASNT 310
P T ++ + + + +AP P LP +ST S L+ A P T + P +
Sbjct: 1848 PETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAPKSTLAPETTAAPDT-TLAPETTV 1906
Query: 309 SLVT*VAERTTRA 271
+ T VA TT A
Sbjct: 1907 APDTTVAPETTAA 1919
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 450 SSHALSALAPGAXITPTPFLPAESTSMLSTPAPARPTT 337
SS +++ + TP+ P+ ST LSTP P++P+T
Sbjct: 196 SSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPST 233
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.5 bits (63), Expect = 3.6
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -2
Query: 537 SPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITP-TPFLPAESTSMLST 361
+P PS S P G P T + P TP TP P+ + SM ST
Sbjct: 496 TPSTPSTPSTPSAPGTP-GTPSTPSTPSAPGTPSTPSTPSTPSTPSTPSTPS-TPSMPST 553
Query: 360 PA-PARPTTFSFTPASNTSLV 301
P+ P+ P+T S TP++ ++LV
Sbjct: 554 PSTPSTPSTPS-TPSTPSTLV 573
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -2
Query: 477 PRTNINVQVSSHALSALAPGAXITPTPFLPAESTSML-STPAPARPTTFSFTPASNTSLV 301
P T + + +S A + LAP P +P EST+ +T AP T A +++
Sbjct: 18 PETTVAPETTSAADTTLAPETTFAPETTVPPESTAAPDTTVAPETTVAIESTLALESTVA 77
Query: 300 --T*VAERTTRA 271
T VA TT A
Sbjct: 78 PETTVATETTVA 89
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 477 PRTNINVQVSSHALSALAPGAXITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTS 307
P + + ++ ++ ++ +AP P TP +P + ++ ST AP TPA T+
Sbjct: 520 PESTLALETTAAPVTTVAPETTAAPDTPIVPETTVALESTVAPEITVVPETTPALETT 577
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 438 LSALAPGAXITPTPFLPAESTSMLSTPAPARPTTFSF-TPASNTSLVT*VAERTT 277
L+A +P TPT P ++T + +TP A PT TP TS T + T+
Sbjct: 210 LTASSP-VETTPTASPPVKTTPLAATPVYATPTAPELTTPLDTTSTATTPVDTTS 263
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 29.1 bits (62), Expect = 4.7
Identities = 26/77 (33%), Positives = 34/77 (44%)
Frame = -2
Query: 537 SPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTP 358
SP PT PS +S P P I + L + ++PT P +TS +STP
Sbjct: 68 SPLPTSTPSTSSS---PVASPLDTI---LRDDLGVPLEIPSFLSPT-LSPLPTTSAVSTP 120
Query: 357 APARPTTFSFTPASNTS 307
R T SFTP + S
Sbjct: 121 GQLRRTPPSFTPRLSIS 137
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/94 (23%), Positives = 37/94 (39%)
Frame = -2
Query: 552 AASVQSPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTS 373
A + +P T P + + P T + + +S + +AP P + E+T
Sbjct: 9 AETTAAPETTVAPE-TTAVLETSAAPETTMVPETTSAPATTMAPETTAAPVTTMAPETT- 66
Query: 372 MLSTPAPARPTTFSFTPASNTSLVT*VAERTTRA 271
+ PA + P + +L T VA TT A
Sbjct: 67 --AAPATTTALETTMVPETTAALETTVASETTDA 98
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = -2
Query: 525 TCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPAR 346
T P +G+ D P T ++++ + S +AP + P +P EST ++T
Sbjct: 1486 TTVPPETTGAPDTTLAPETTVSLESTLALESTVAPETTMAPESTVPPEST--VATETTVA 1543
Query: 345 PTTFSFTPASNTSLVT*VAERTTR 274
P T + ++ +T + T R
Sbjct: 1544 PETTAAPESTLAPDITAAPDTTMR 1567
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 543 VQSPXPTCQPSGASGSWDPRGEPRTNINV--QVSSHALSALAPGAXITPTPFLPAESTSM 370
+ +P TCQP GA + + GE T+I+ + S S ++PG + PT +P + S
Sbjct: 354 ILAPPSTCQPQGAR-ALESEGEVPTDISPRDRPSDQGTSDVSPG-EVQPTQ-VPLSAPSP 410
Query: 369 LSTPAPAR 346
TP R
Sbjct: 411 GETPRSRR 418
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Frame = -2
Query: 564 PAXXAASVQSPXPTCQP-----SGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPT 400
P+ A S P P P + +SG P P ++ S + AP A P+
Sbjct: 463 PSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTTVTAPPAAPPPS 522
Query: 399 PFLPAESTSMLSTPAPARPTTFSFTPAS 316
F P+ T P P F P+S
Sbjct: 523 VFAPSSGVPTPVTEPPPAPPPSVFAPSS 550
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 480 EPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPARPTTFS--FTP 322
+P T ++V + + + + G +TP P+LPA ++ T P+T+ +TP
Sbjct: 489 QPITCVDVNAALGLVVSGSQGKLLTPFPYLPAAEYTLPLTSRLIHPSTYKPLYTP 543
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 405 PTPFLPAESTSMLSTPAPARPTTFSFTPASNTS 307
P P ST +STP R T SFTP S+ S
Sbjct: 453 PPTLSPLASTQPVSTPRQQRRTPPSFTPRSSIS 485
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 453 VSSHALSALAPGAXITPTPFLPAESTSML 367
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 399 PFLPAESTSMLSTPAPARPTTFSFTPASN 313
P P+ ++ TP PT F FTP +N
Sbjct: 444 PVTPSSGSTTRQTPNSIEPTRFHFTPITN 472
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = -2
Query: 525 TCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAESTSMLSTPAPAR 346
T G+SGS D E ++Q S LA T LPA S L + +P+
Sbjct: 5 TSYGEGSSGSTDSAIEKTVPRSIQTLQK--STLA--TINTNVSMLPASQGSSLPSSSPSS 60
Query: 345 PTTFSFTPASNTSLVT 298
P++ P+S+T + T
Sbjct: 61 PSSLINDPSSSTEIWT 76
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 426 APGAXITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTT 277
AP A +TPT A + + T APA P T + PA+ VT A R T
Sbjct: 61 APAAPVTPT---AAPAARVTPTAAPAAPVTPTAAPAAR---VTPTAARVT 104
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -2
Query: 561 AXXAASVQSPXPTCQPSGASGSWDPRGEPRTNINVQVSSHALSALAPGAXITPTPFLPAE 382
A A+ Q PT S + R P ++ +SSH+ S+ PG+ +P P
Sbjct: 193 AGSTATGQHATPTGHGIPPSSTPQARAPPHSSTQ-PLSSHSGSSPQPGSAFSPVNTPPNA 251
Query: 381 STSMLSTPAPARP 343
++ P+ A P
Sbjct: 252 QAQQMTPPSSAAP 264
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 426 APGAXITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTT 277
AP A +TPT A + + T APA P T + PA+ VT A R T
Sbjct: 218 APAAPVTPT---AAPAARVTPTAAPAAPVTPTAAPAAR---VTPTAARVT 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,231
Number of Sequences: 59808
Number of extensions: 310469
Number of successful extensions: 1153
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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