Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N13
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 471 TNINVQVSSHALSALAPGAXITPTPFLPAESTSMLS 364
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
 Frame = -1

Query: 673  IXXHERVDPMMFMPKAYIXXATSRXTLPRPRMGRVXXSEXRCQ----CTEPRXHLPAFRR 506
            I  H   DP   M +     A +R   P PRMG       R      C     HL  FR 
Sbjct: 1676 IRSHSTWDPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFRE 1735

Query: 505  Q 503
            +
Sbjct: 1736 E 1736


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,536
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)