Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N12
         (1181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    27   0.56 
11_06_0202 - 21184217-21184503,21184622-21184982                       31   2.3  
12_02_1174 - 26696869-26698191                                         29   9.5  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 26.6 bits (56), Expect(2) = 0.56
 Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 1/106 (0%)
 Frame = +2

Query: 446 PPXPXPPPXIXXXXXGRKXCXXXXXVXDRXITLFPPTXVAXXXQPPXXGVPAEPXKXXXX 625
           PP P PPP I               + +  + L PP         P   VP  P      
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPPPPPLPNHSV-LPPPPPPPPPPSLPNRLVPPPPAPGIGN 660

Query: 626 XAPTRDAXXLXP-TKARXPRXXP*AXQXFPPPPXXPXTYXSRGXXP 760
             P        P + +R P     + +  PPPP  P    +R   P
Sbjct: 661 KFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGP 706



 Score = 24.6 bits (51), Expect(2) = 0.56
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 434 PXFXPPXPXPPP 469
           P F PP P PPP
Sbjct: 559 PAFSPPPPPPPP 570


>11_06_0202 - 21184217-21184503,21184622-21184982
          Length = 215

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/70 (27%), Positives = 26/70 (37%)
 Frame = +2

Query: 542 LFPPTXVAXXXQPPXXGVPAEPXKXXXXXAPTRDAXXLXPTKARXPRXXP*AXQXFPPPP 721
           + PP   +   QPP  G  AE        +PT         K   P     +    PPPP
Sbjct: 125 VLPPYEPSSPQQPPSAGKLAESPAATPAQSPTAAPSLPQAPKPSSPPPFT-SPSPLPPPP 183

Query: 722 XXPXTYXSRG 751
             P ++ +RG
Sbjct: 184 PPPTSHGARG 193


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 28/115 (24%), Positives = 33/115 (28%)
 Frame = +2

Query: 431 PPXFXPPXPXPPPXIXXXXXGRKXCXXXXXVXDRXITLFPPTXVAXXXQPPXXGVPAEPX 610
           PP   PP P PPP                    R  ++ PP        PP    P+ P 
Sbjct: 149 PPSLPPPPPPPPPP----------------PPPRPPSVKPPVVQPKPQPPPSLQPPSPPP 192

Query: 611 KXXXXXAPTRDAXXLXPTKARXPRXXP*AXQXFPPPPXXPXTYXSRGXXPVCASP 775
                  PTR      P     P+  P      PPPP       + G  P    P
Sbjct: 193 PP-----PTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEP 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,718
Number of Sequences: 37544
Number of extensions: 282831
Number of successful extensions: 1710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)