Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N12
         (1181 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    30   2.6  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    24   6.7  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    29   7.8  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   7.8  

>At4g27850.1 68417.m03999 proline-rich family protein contains
            proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/71 (26%), Positives = 22/71 (30%)
 Frame = +1

Query: 949  PRXDXPXEQIXXPPLSGLPAXSXGLAXXXPGLPXQPGAXXSARXPVPXXXXLAXXALXAP 1128
            P  D P   +  PP S  P          PG P  P        P+P     +      P
Sbjct: 221  PGPDSPLP-LPGPPPSSSPTPGPDSPLPSPGPPPSPSPTPGPDSPLPSPGPDSPLPSPGP 279

Query: 1129 RRPCXDPXPHL 1161
              P   P PHL
Sbjct: 280  DPPLPSPGPHL 290


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 16/64 (25%), Positives = 18/64 (28%)
 Frame = +2

Query: 548 PPTXVAXXXQPPXXGVPAEPXKXXXXXAPTRDAXXLXPTKARXPRXXP*AXQXFPPPPXX 727
           PP        PP    P  P        P+       P     P   P     +PPPP  
Sbjct: 383 PPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPP--PYVYPPPPSP 440

Query: 728 PXTY 739
           P  Y
Sbjct: 441 PYVY 444



 Score = 23.4 bits (48), Expect(2) = 6.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 431 PPXFXPPXPXPPP 469
           PP   PP P PPP
Sbjct: 376 PPSPPPPPPPPPP 388


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 24/99 (24%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
 Frame = +2

Query: 431 PPXFXPPXPXPPPXIXXXXXGRKXCXXXXXVXDRXITLFPPTXVAXXXQPPXXGVPAE-P 607
           PP + PP   PPP        +K       V D       P  V     PP   +P   P
Sbjct: 183 PPKYSPPVEVPPPVPVYEPPPKKEIPPPVPVYDPPPKKEVPPPVPVYKPPPKVELPPPIP 242

Query: 608 XKXXXXXAPTRDAXXLXPTKARXPR-XXP*AXQXFPPPP 721
            K      P  +     P     P+   P     + PPP
Sbjct: 243 KKPCPPKPPKIEHPPPVPVYKPPPKIEKPPPVPVYKPPP 281


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 28/116 (24%), Positives = 32/116 (27%), Gaps = 1/116 (0%)
 Frame = +2

Query: 431 PPXFXPPXPXPPPXIXXXXXGRKXCXXXXXVXDRXITLFPPTXVAXXXQPPXXGVPAEPX 610
           PP + PP P PPP                 V        PP        PP    P+ P 
Sbjct: 433 PPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPP---PSPPP 489

Query: 611 KXXXXXAPTRDAXXLXPTKARXPRXXP*AXQXFPPP-PXXPXTYXSRGXXPVCASP 775
                 +P        P     P   P      PPP P     Y +R   P   SP
Sbjct: 490 PPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSP 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,608
Number of Sequences: 28952
Number of extensions: 176606
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 2996938640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)